Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,412,897	G→A	L113L (CTC→CTT)	intR ←	putative integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,412,897	0	G	A	100.0%	128.5 / NA	41	L113L (CTC→CTT)	intR	putative integrase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (17/24);  total (17/24)

GTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTCCGGCCTTTTTAATATTACTGTTTGTAATCTCC  >  NC_000913/1412651‑1413137                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                 gTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAgtg                                                                                                                                                                                                                                              <  1:34242/251‑1 (MQ=255)    tCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGtt                                                                                                                                                                                                                                            <  1:809177/250‑1 (MQ=255)     cGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCGAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGttt                                                                                                                                                                                                                                           <  1:475191/250‑1 (MQ=255)     cGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGtttt                                                                                                                                                                                                                                          <  1:804385/251‑1 (MQ=255)                  ttACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTc                                                                                                                                                                                                                             >  2:699139/1‑251 (MQ=255)                        cTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTATGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTttc                                                                                                                                                                                                                       >  1:488328/1‑251 (MQ=255)                             aatggatgtgttaatatAAAATCCGTCTGATACTCAAAACGCATCATCGAACAGAGCAGGGCTTTAGTGTTATTAACTTTGCGCACGGTTCTTCCTTTTTTGTTTGATCTGGGATTATCCAGGTAAAGCGGTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATCTCGTTTTCTTCAt                                                                                                                                                                                                                  <  2:707107/238‑1 (MQ=255)                                                         gctactcAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAAGTATTATTCTAAGTGTTTTTAATTTTGATTTCGTTTTCTTCATTGTGTTTTTTGTTAACTCTGTctcta                                                                                                                                                                                        <  2:812863/243‑2 (MQ=255)                                                                 aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGt                                                                                                                                                                              <  1:347198/251‑1 (MQ=255)                                                                         cAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTTGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGatat                                                                                                                                                                      <  2:30874/251‑1 (MQ=255)                                                                          aGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTACTTTTTGTCCAGATATc                                                                                                                                                                     >  1:691728/1‑251 (MQ=255)                                                                              aaCAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATcaca                                                                                                                                                                  >  2:185027/1‑250 (MQ=255)                                                                                   agCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGctc                                                                                                                                                            <  1:547964/251‑1 (MQ=255)                                                                                                      cAACTGTGCGCACTGTTCTTCCTTTTTTGTTGTATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGAct                                                                                                                                         <  2:42425/251‑1 (MQ=255)                                                                                                                                   ttgGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTT‑GCCCCAGTGCTg                                                                                                           >  2:620960/1‑251 (MQ=255)                                                                                                                                     ggATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGCTATCGCTATAACGAATCTGTGATCTCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTgg                                                                                                          >  1:826092/1‑251 (MQ=255)                                                                                                                                     ggATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTg                                                                                                           <  1:425869/250‑1 (MQ=255)                                                                                                                                                         aaaGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTATGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTaa                                                                                       >  2:645213/1‑250 (MQ=255)                                                                                                                                                           aGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGGCACCATTTTTGCCCCAGTGCTGGACTGTGGAAAACGTCTTAAATa                                                                                    <  1:237768/251‑1 (MQ=255)                                                                                                                                                              gTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTc                                                                                 <  1:699139/251‑1 (MQ=255)                                                                                                                                                                  ctcCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTttgttg                                                                                                                                                                                                       >  1:15876/1‑129 (MQ=255)                                                                                                                                                                  ctcCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTttgttg                                                                                                                                                                                                       <  2:15876/129‑1 (MQ=255)                                                                                                                                                                    ccATTCAGCAGTTCATTCCAGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCGCCATTTTTGCCCCAGTGCTGGACTGGGGAATACGTCTTAAATACTCaaa                                                                              <  1:872789/248‑1 (MQ=255)                                                                                                                                                                         cagcagTTCAATCCGGTAGTTTAAGATATCGCTATAACGAATATGTGAGATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCGTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCgg                                                                      <  2:691728/251‑1 (MQ=255)                                                                                                                                                                             agTTCATTCCGGTAGATTAAGATATCGACATAAAGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGTCTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGCGtt                                                                  >  2:51356/1‑251 (MQ=255)                                                                                                                                                                                    tCCGGTAGTTTAAGATATCGCTATCACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTc                                                            >  1:651906/1‑250 (MQ=255)                                                                                                                                                                                       ggTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTT‑GCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGaa                                                       <  1:620960/251‑1 (MQ=255)                                                                                                                                                                                        gTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGaa                                                       <  2:756102/251‑1 (MQ=255)                                                                                                                                                                                        gTAGTTGAAGATATCGCTATAACGAATATGTGATATCGGAGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAATGCTCTCCGAACGTTTTTATCACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGTGAACCCGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGa                                                        >  2:284310/1‑250 (MQ=255)                                                                                                                                                                                                aGATATCGATATAACGACTATGTGATAGCGGGGTACTTTCACAAATTATTATTCTAAGTTTTTTTAATTGTGATTTCGTTTTTTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTCATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTTCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCCTGAACTTTCatc                                               <  2:187986/251‑3 (MQ=255)                                                                                                                                                                                                      cGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCAGTTTTGCCCCAGTGCTGGACTGGGGAAAACTTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGctct                                          <  1:872102/250‑1 (MQ=255)                                                                                                                                                                                                      cGCTATAACGAATATGTGATATCGGGGAACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTATTAAATACTCAAATTCACCGGAGATTATTTCATGAACTATCAGCGCTCtt                                         >  1:607351/1‑251 (MQ=255)                                                                                                                                                                                                          ataACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTa                                                                                                                                                                                                    <  2:93129/92‑1 (MQ=255)                                                                                                                                                                                                          ataACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTa                                                                                                                                                                                                    >  1:93129/1‑92 (MQ=255)                                                                                                                                                                                                             aCGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTc                                  <  1:692661/251‑1 (MQ=255)                                                                                                                                                                                                              cGAATATGTGATATCGGGGTACTTTCACAAACTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTcc                                 >  2:641767/1‑251 (MQ=255)                                                                                                                                                                                                                aaTATGTGATATCGGGGTACTTTCACAAATTATTAGTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTCCgg                               <  2:440283/251‑1 (MQ=255)                                                                                                                                                                                                                       gATATCGGGGTACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGCACGTTTTTATGACTCTAGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCACATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTCCGGCCttttt                        >  1:461112/1‑251 (MQ=255)                                                                                                                                                                                                                         tatCGGGGAACTTTCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCTTTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGTGGAACACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGACCTATCAGCGCTCTTAAATTTCCGACCTTTTTat                      >  2:141878/1‑250 (MQ=255)                                                                                                                                                                                                                                    tttCACAAATTATTATTCTAAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTCCGGCCTTTTTAATATTACTGttt           >  1:457770/1‑251 (MQ=255)                                                                                                                                                                                                                                              tattattCTAAGTGTTTTTAATTGTGATTTCATTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTCCGGCCTTTTTAATATTACTGTTTGTAATCTcc  <  2:278623/250‑1 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                 GTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGAGTGTTTTTAATTGTGATTTCGTTTTCTTCATTGTGTTTGTTGTTAACTCTGTCTCTTTAATTTTTGTCCAGATATCACAAAGCTCTCCGAACGTTTTTATGACTCTCGTTGTCACCATTTTTGCCCCAGTGCTGGACTGGGGAAAACGTCTTAAATACTCAAATTCACCGGAGTTTATTTCATGAACTATCAGCGCTCTTAAATTTCCGGCCTTTTTAATATTACTGTTTGTAATCTCC  >  NC_000913/1412651‑1413137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑