| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,561,215 | 0 | G | A | 26.5% | 88.4 / 12.7 | 49 | E96K (GAA→AAA) | kptA | RNA 2'‑phosphotransferase |
| Reads supporting (aligned to +/- strand): ref base G (32/4); new base A (0/13); total (32/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.06e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGTTTTTAAGTTTTGTCCTCCGACACAAACCGGAGGCGATTGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGAC > NC_000913/4560970‑4561450 | aGTTTTTAAGTTTTGTCCTCCGACACAAACCGGAGGCGATTGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGaaaa > 2:439251/1‑250 (MQ=255) tttAAGTTTTGTCCTCCGACACAAACCGGAGGCGATTGGTATCGTACTGGACCGTGCAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGCC‑GCTATTTCCTTTGCCGAAAAAacac > 1:539605/1‑251 (MQ=255) agatgtGTCCTCCGAAACAAACCTGAGGCGATCTCTATCGTACTGGACCGGGAAGGATTGGCGGAACTCGATAAGCTCATACTTTGGGCCCAAAAAGCTGGAGAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGTTTTCCACTA‑GCGATAAAAAGCGTTGTAGTTATTCCAGTGAGGGTAGGTT‑AAT‑CCTCACGGTCCAGGGGCATT‑CGACTTC‑GCAGGTA‑GCTATTTCTTTGGCCGAAAAAACACCGca < 2:621088/246‑2 (MQ=255) catccgacaaaaaccgtgggtggtgggTATTGTACTGGCCCGTGAAGGAGGGGGTGATAGCGAAAATCTAATACTTTGTGCCAAAAAAGCGGGAAAGCGTTAAACCCG‑TGCTTTGCTGG‑AAACTGTGGTTGCCAACA‑GCAAAAAAAAGCGTTTTAGTTATCCCAGTGATGGTGGTTG‑CAT‑CCGGGCGGTTAAGGGCCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCAAAAAAACACCGCCACAGttt < 2:318645/225‑1 (MQ=255) ctccGACACAAACAGGAGGCGATTGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTACCACCA‑GCGATCAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCGGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCcaaggtttat > 2:508644/1‑243 (MQ=255) tccGACACAAACCGGAGGCGATTGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTtctc > 2:526987/1‑251 (MQ=255) caAACCGGAGGCGATTGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTAACACg > 1:385834/1‑251 (MQ=255) gTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAACAAACACCGCCACAGTTTCTCTACCACGATACGGCAAGCCGTTTc > 1:126692/1‑251 (MQ=255) aTCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CAGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTA‑GCTATTTCCTTTGCCGAAAAAACACCGCCACCGTTTCTCTACCACGGTCCGGCAAGCCGTTTCCt > 2:579929/1‑251 (MQ=255) gTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTgc > 2:855279/1‑250 (MQ=255) gTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTg > 1:134358/1‑250 (MQ=255) gTACTGGACCGTGAAGGATGGGCGGATATCGAAAAGCTCATACTTTGTGCCAAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGTTGG‑ATACTGGGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATCCCAGTGATGGTGGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGCC‑GTTATTTCTTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGa < 1:76564/251‑1 (MQ=255) aaaagggggggtgaatagaaaaaaccTCATTCTTTG‑GCCCAAAAAGGGGGCAAGGGGTTTACCCGGTTCATGTCTGG‑ATTCTGTGGTTCCCACTA‑GATAAAAAAAGTGTTATATTTATTCCAGTGATGGGGGGT‑‑CATTCCTCGCG‑TTTAGGGGCATTTCCCCTCG‑GGAGTCC‑GCTATTTCCTTCGACAAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCGTGACGAGATaaaaa < 2:342333/226‑1 (MQ=255) gggaggggggtatatCGATAAGCTCATACTTTGGGCCAAAAAAGCGGGCAAGCGTTTACCCCG‑TGCATTGCTGG‑ATACTGTGGTGGCCACCA‑GGGATAAAAAGCGTTTTAGTTATCCAAGTGAGGGTAGGTG‑CAC‑CCGCGCGGTTCAGGGGCTTT‑CGACTCC‑GAGGGTC‑GTTATTTCTTTTGCAAAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAAc < 1:684370/240‑1 (MQ=255) ggCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAATAAAACAGGGGc > 2:224366/1‑251 (MQ=255) ggatatagttaagctcaccttttGGGCCAAAAAAGCGGGCAAGCGGTTACCCCG‑TGC‑TTGGTGGGTTACT‑TTGTTGGCACCAAGCAATAAAAAGCTTTTTAGTTATCCCAGTGATGGTGGGTG‑CAT‑CCGCGGGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCAAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGa < 1:244491/231‑1 (MQ=255) atataacctcatcttttGTGCCAAAAAGGCGGGCAGGGGTTTAACCCG‑TGCCTTGTGGG‑ATCCTGGGGTTGCCACCA‑GCGATAAAAACCTTTTTAGTTATTCCAGTGTTGGAGGGTC‑CAC‑CCGCGCGGTTAAGGGGCTTT‑CGCCTTC‑GCAGTTC‑GTTATTTTCTTGGCCAAAAAAACGCCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAg < 1:448556/237‑1 (MQ=255) tAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTg > 1:858236/1‑251 (MQ=255) tAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGAAGGTG‑CAT‑CCGAGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGAACGGCAAGCCGTTTCCTTGACGAGATGAAAAAACAGGGGCTGGTTgacgggg > 2:760317/1‑245 (MQ=255) aGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCCGGGGCATT‑CGCCTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAgggg > 2:263073/1‑247 (MQ=255) tgtgCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGCTAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGt > 2:327282/1‑251 (MQ=255) tgCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTAc > 1:153344/1‑251 (MQ=255) ttAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAAc > 1:355184/1‑251 (MQ=255) gg‑ATACTGTGGTTGCCACCA‑GGGATAAAAAGCTTTTTAGTTATCCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCGGGGGCATT‑CGACTTC‑GCAGGTC‑GCTTTTTCCTTTGCCAAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGa < 1:327282/250‑1 (MQ=255) tgttACTGTGGTTCCCCACA‑GAGAAAAAACGCGTTTTATTTATTCCTGTG‑TTGTAGGGGTCAT‑CCGCGTGGTCCAGTGGAATT‑C‑ACTTCCGCAG‑TCTGTTATTCCTTTTGCCAAAAAAACTCCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGa < 1:696194/247‑1 (MQ=255) gtaTACTGTGGTGGCCACCA‑GCTATAAAAAGCGTTTTAGTGTTCCCAGTGAGGGGAGTTT‑CAT‑CCGCGAGTGTCGGGGGCATC‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACTCCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGa < 1:696161/248‑1 (MQ=255) gggggTTGCCCCCA‑GCAATAAAAAGCGTTTTAGTTATCCAAGTGTGGGTGGGTG‑CAC‑CCGCGCGGTACGGGGGCTTT‑CGACTTC‑GAGGGTC‑GCTTTTCCCTTTGCCAAAAAACCACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCaa < 1:855279/245‑1 (MQ=255) gTTGCCCCCA‑GCAAAAAAAAGCGTTTTATTTATTCCAGTGAGGGTGGGTG‑CAC‑CCGCGCGGTTCAGGGGCTTT‑CGCCTTC‑GCAGGTC‑GTTTTTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACgg < 1:93227/251‑1 (MQ=255) cca‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GATATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCACTGATGATGATGCAAAGGCACGCAAGGAGGGAGCAAGaacaggatcaccg > 2:684795/1‑239 (MQ=255) ca‑GCAATAAAATGCGTTTTATTTTTCCCAGTTATGGTGGGTG‑CTC‑CCGGGCGTTTCAGGGGCTTC‑CGCCTTC‑GCAGGTC‑GTTATTTCTTTTGCCAAAAAACCCCCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCgg < 1:274280/251‑1 (MQ=255) aaaaaGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTAtttt > 1:682191/1‑251 (MQ=255) aaaaGCGTTTTAGTTTTCCCAGTGAGGGGAGTTG‑CCC‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCGGGTC‑GCTATTTCCTTGGCAAAAAAACCACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTa < 1:325052/251‑1 (MQ=255) tttCCAGGGTTGGTGGGTG‑CAC‑CCGCGCGGTTCAGGGGCTTC‑CGCCTCC‑GCGGGTC‑CTTTTTTCCTTGGCAAAAAAACCACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGcaca < 1:367018/249‑1 (MQ=255) tCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAgg > 2:291080/1‑250 (MQ=255) gATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTCGCCGAAAAAACACCGACACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCCGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAACGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACAGTCAAAGCACCGGAAATGGc > 1:552073/1‑251 (MQ=255) aTGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGCGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATATTAACCGTCAAAGCACAGGAAATGGCg > 2:603346/1‑251 (MQ=255) aTGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCg > 1:411546/1‑251 (MQ=255) tGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGCAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGATGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACCGGAAATGGCg > 2:522727/1‑250 (MQ=255) gTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCAACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGTAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGaa > 1:485698/1‑250 (MQ=255) tG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAACTGGCGAAACGAgg > 1:488687/1‑251 (MQ=255) g‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCCAAGCACAGGAAATGGCGAAACGAGGc > 1:826584/1‑251 (MQ=255) gcgcgGTTCAGGGTCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCt > 1:352166/1‑251 (MQ=255) cgGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTc > 1:167940/1‑251 (MQ=255) cATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAACGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGTCGAAACGAGGCCTCCCTTTCTGGCAAGCgg > 1:416863/1‑250 (MQ=255) cATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCgg > 1:566819/1‑250 (MQ=255) c‑GCAGGTA‑GCTATTTCCTGTCCCAAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTc < 1:291080/251‑1 (MQ=255) gCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACATGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCt > 1:260417/1‑251 (MQ=255) gtggctgCTATTTCCTTTGACAAAAAAACCCCGCCACAGGTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTg < 2:355184/245‑1 (MQ=255) gCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGAc > 1:296519/1‑251 (MQ=255) | AGTTTTTAAGTTTTGTCCTCCGACACAAACCGGAGGCGATTGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGGTTAACCCG‑TGCATTGCTGG‑ATACTGTGGTTGCCACCA‑GCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTG‑CAT‑CCGCGCGGTTCAGGGGCATT‑CGACTTC‑GCAGGTC‑GCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGAC > NC_000913/4560970‑4561450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |