Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,001,911	0	G	A	37.1%	31.5 / 16.6	35	intergenic (‑122/+1)	fliA/fliX	RNA polymerase sigma factor FliA/small RNA FliX
Reads supporting (aligned to +/- strand):  ref base G (16/6);  new base A (0/13);  total (16/19)
Fisher's exact test for biased strand distribution p-value = 1.88e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCTTTT  >  NC_000913/2001666‑2002158                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                         cAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGaaaaa                                                                                                                                                                                                                                                     <  2:609565/251‑1 (MQ=255)       ccccGCTCGCGGGACGTCTGACCTGCAGGCGCAGTGCTTCGTGACGCACACGCGGGACATCACGCTGCCACAGCGAGTGTTTATTCATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATCAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTTCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAAcccc                                                                                                                                                                                                                                               <  2:381142/248‑1 (MQ=255)           gCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCcc‑gccg                                                                                                                                                                                                                                          >  1:72982/1‑251 (MQ=255)                            ccTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGGGGCGGGGAAGccagg                                                                                                                                                                                                                         >  2:28751/1‑247 (MQ=255)                               ggaGGCGAAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCAAAGGTGGTTTTTATCCATTCCCCCT‑TCAGCGGTATAGAG‑G‑AATTTCAC‑GATAAACAGCCCGGTGTTATATGATTGACCGGCA‑TGATTATCCGTTTCTGCGGGTTTTTTAA‑TCGGAC‑GATTAGTGGGTAAAATGGGGGTTTATTGGGGGGTT‑AGAGGAAAATCCCAGGC‑GAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGtt                                                                                                                                                                                                                        <  1:705812/247‑1 (MQ=255)                                         tgtgtCGTGCCGCACCAGCGGGACATACCGCTGCCACAGCGATTGTTTATCCATTCCCCCT‑TCAGCGGTATAGAGTA‑AATT‑CAC‑GATAAACAGCCCTGGTTTATATGAGTTAGCGGCA‑TTATTCTCCTTTTCTGCGGGGTTTTTAA‑TCGGAC‑GATTAGGGGGTAAAAGGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt                                                                                                                                                                                                             <  1:28751/246‑1 (MQ=255)                                             tCGTGCCGCCCCGGCGGGACATAACGCGGCCACAGGGAGTTTTTATCCATTACCCCT‑TCAGCGGTAAAGAGTA‑AATC‑CAC‑GAAAAACAGCCCTGCGTTATATGATTTATCGGCA‑TGATTATCCGTTTCGGCAGGTTTTTTAA‑CCGGAC‑GATTGGGGGTTGAAATGAGGGTTTATTTGGGGGTT‑ACAGTTAAATTCCAGGCAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcgc                                                                                                                                                                                                         <  1:375632/250‑1 (MQ=255)                                               gggACGCCCCGGCGGGAAATAACGCTGCCACAGGGAGTTTTTACCCATTCCCCCT‑TCAGGGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCTTTATATGAGTTATCGGAA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GTTTAGGGGGTGAAATGAGGGTTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt                                                                                                                                                                                                      <  1:232512/249‑1 (MQ=255)                                                      aCCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGATTTTAA‑TCGGAA‑GTTTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCGGAAAAATTGCGATTTATGTTGc                                                                                                                                                                                               >  2:870011/1‑251 (MQ=255)                                                       caggggggAAATACCGCGGCCACAGCGATTGTTTATCCATTCCACCT‑TCAGCGGTATAGAGTA‑AATT‑CAC‑GATAAACAGCCCTGCTTTATAGGAGTTAGCGGCA‑TGTTTATCCGTTTCGGGAGGGTTTTAAA‑GCGGAC‑GATTAGGGGGTGAAAGGGGGGGTT‑TTTGGGGGTTTACAGGTAAATCCCAGGAAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc                                                                                                                                                                                              <  1:113560/246‑1 (MQ=255)                                                         aGCGGGACATACCCATGACACAGCGAGTTTTTATCCATTACTCCT‑TAAGCGGAAT‑GGGTGGAAGC‑CAC‑GATAACCACCGCGGCGTTATAGGATTTAT‑GGCAATGTTCATCCGTTTCTG‑AGGGTTTTTAAATCGGAC‑GATTAGGGGGCAAAGTGGGGGGTTATTGGGGGGTT‑AGAGATAAATCCCAGGAAAAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCgg                                                                                                                                                                                            <  1:195570/251‑1 (MQ=255)                                                                            ccaGCGATTGTTTATCCATTCCCCCT‑TCAGCGGTATAGAGTG‑AAT‑‑CACCGATAAACAGCCCTGTGTTATATGAGTTATCGGAT‑TGATTATCGTTTTCGGCAGGTTTTTAAA‑TCGGAC‑GATTGGTGGGTAAAAGGAGGGGTTATTGGGGGGTT‑ACAGGAAAATTCAAGGCAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTa                                                                                                                                                                         <  1:778478/250‑1 (MQ=255)                                                                             caGCGAGTGTTTATCAATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGGTTTTAA‑TCGGTC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTACAGGCAGCAAAAAACCCC‑GCCGGGGGCGGGGAAGTCCGTTGCTGACAACTGGCGCTTTATGTTGCCGGATGCGGCGTAAAAGCCTTAt                                                                                                                                                                        >  2:518876/1‑251 (MQ=255)                                                                                   gtgtTTATCCATTAC‑CCTATCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAAAAGCCCTGCGTTATATGGGTTATCGGCA‑TGATTATCGGTTTCTGCAGTTTTTTTAA‑CCGGAC‑GATTAGTGGGGGAAAGGAGGGGTTATTTGGGGTTT‑ACAGGTAAATTCCAGACAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                                                                                  <  2:135815/251‑1 (MQ=255)                                                                                    tttttATCCATTCCCCTT‑TCAGCGGTATAGAGTA‑AATC‑CAC‑AATAAACAGCCCTGCTTTATATGATTTATGGGCT‑TGTTTCTCCGTTTCTGCAGTGTTTTTAA‑TCGGAC‑GTTTGGTGGGTGAAATGAGGGGTTTTTTGGGGTTT‑ACAGTTAAATTCCAGGCAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                                                                                  <  1:517843/248‑1 (MQ=255)                                                                                            cATTACCCCT‑TCGGGGGTATAGAGTG‑AATT‑CAC‑GAAAAACCGCCCTGCGTTATTTGATTTACCGGCT‑TGATTATCCGTTTCTGCAGGTTTTTTAC‑TCGGAG‑TATTAGGGGGTAAAATGAGGGTTTATTGGGGGGTA‑ACAGGTAAATCCCAGGAAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt                                                                                                                                                         <  1:192852/251‑1 (MQ=255)                                                                                                       tCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCAACAAAAATGTGCAAATTc                                                                                                                                               >  1:532136/1‑251 (MQ=255)                                                                                                                  gagTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCGGAAAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGGGCAAATTCAATAAATTGc                                                                                                                                     >  2:43286/1‑250 (MQ=255)                                                                                                                    gTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGATTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAt                                                                                                                                  >  1:543168/1‑251 (MQ=255)                                                                                                                           t‑CAC‑GATAAACAGCCCTGCGTTATATGATTTAGCGGCA‑GGATTTTCCTTTTCTGCGGGTTTTTTAA‑TCGGAC‑TATTAGTGGGTAAAATGAGGGTTTATTGGGGGTTT‑AAAGTAAAATCCCAGGAAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAAc                                                                                                                             <  1:329536/250‑1 (MQ=255)                                                                                                                              cagaaTAAGCAGCCCTGTGTTATATGAGTTACCGGGA‑TGATTATCCGTTTCGGAGGGGTTTTTAA‑TCGGAC‑GATTAGGGGGGAAAAGGGGGGGTTATGGGGGGGTT‑ACAGGAAAATCCCAGGAAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACtt                                                                                                                           <  1:640389/247‑1 (MQ=255)                                                                                                                               c‑GATAAACAGCCATGCGTTATATGAGTTATCGGCA‑TGATTCTCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAACACGTTGCTGACAAATTGCGCTTTATGTTGCCGGAAGCGGCGGAAACGCCTTATCCGACCTACCAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt                                                                                                                         >  2:778855/1‑251 (MQ=255)                                                                                                                                         gCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTAAACTTGTAGGCCTGAt                                                                                                                >  1:550689/1‑251 (MQ=255)                                                                                                                                                        tgTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTCA‑TCGGGC‑GATTAGTGGGTGAAATGAGGGGGTTTTTGGGGGTT‑ACAGGTAAATTCCAGGAAGAAAAAAACCCC‑TCCGGGGGCGGGGAAGCACATTTCTGACAAACTTAGCTTTATGTTTCCGGATGCGGCGGTAACGCCTTAACCGGCCGATAAAAATGGACAAAATCGATAAAATGAAATTCACCTTGTAGGACTgcaaagccaagcgaatac                                                                                                 >  2:204208/2‑234 (MQ=255)                                                                                                                                                                          tCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGcc                                                                                >  1:292938/1‑251 (MQ=255)                                                                                                                                                                           ccgttcgtGCAGGGTTTTTAA‑TGGGAA‑GTTGGGTGGGTAAAGTGGGGGGTTATT‑GGGGGTTGAAAGGAAAATTCCAGGCAAAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGTGGCGTAAACGCCTTATCCGGCTTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGcc                                                                                <  1:152732/243‑1 (MQ=255)                                                                                                                                                                                   gCAGGTTTTTTAA‑T‑GGACTGAGTTGTGGGTAAAATGGGGGTTTTTTTGGGGGTT‑ACATGTAAATTCCAGGAAAAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGtct                                                                        <  1:870011/250‑1 (MQ=37)                                                                                                                                                                                        ggttttttaaccggccttttAGGGGGTAAAATGGGGGGTTATTTGGGGTTT‑ACAGGAAAATTCAAGGAAAAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGt                                                                    <  1:308459/233‑1 (MQ=37)                                                                                                                                                                                               a‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGt                                                           >  1:269183/1‑251 (MQ=255)                                                                                                                                                                                                                  tGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAATCACC‑GCCGGTGGCGGGGAAGAACGCTGCTGACAAATTGCGCTTTTTGTTGCCGGATGGGGCGTAAAAGCCTTATCCGGCCTACAAAAATGAGCAATTTCAATTAATTGCAATTCAACTTGTAGGCCTGATAATCGAAGAGCATCAGACCATTAGGCGTTGCCGGCAGTCGCCTTTAATGAGTTTACAAAGGTTAAccacg                                          >  2:468434/1‑248 (MQ=255)                                                                                                                                                                                                                                agtggggggTA‑ACAGGAAAATTCAAGAAAAAAAAACCCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGAc                                <  1:37979/243‑1 (MQ=38)                                                                                                                                                                                                                                aTTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGAc                                >  2:37979/1‑247 (MQ=255)                                                                                                                                                                                                                                      gggat‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGCCAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACACCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCCGGTTACAACAATTACCCCTGCACCAGGGACAGAACctgct                      >  1:642649/5‑251 (MQ=39)                                                                                                                                                                                                                                                gtataacacAGGAAGAAAAAACCCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCt             <  2:229938/243‑1 (MQ=255)                                                                                                                                                                                                                                                           gCAGTAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATATGCAAATTCAATAACTTGCACTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGACGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGCGACAGAACCTGCTGCGGTACCTGGttcactttt  >  2:792441/1‑244 (MQ=39)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                         CAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCT‑TCAGCGGTATAGAGTG‑AATT‑CAC‑GATAAACAGCCCTGCGTTATATGAGTTATCGGCA‑TGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGAC‑GATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGTAAATTCCAGGCAGAAAAAAACCCC‑GCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCTTTT  >  NC_000913/2001666‑2002158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑