| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,984,192 | 0 | G | C | 31.6% | 77.3 / 21.2 | 57 | A293G (GCG→GGG) | araG | arabinose ABC transporter ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (13/26); new base C (17/1); total (30/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.15e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGATTACACAACCGCCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCGGTAAAGGTTTTGACATAACGTCCATCTTTAAAGACAGTAATGGC > NC_000913/1983959‑1984436 | tgATTACACAACCGCCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATCTAAACCTGACCGGCGGTGA‑GTTTCGTCCC‑GCC‑CA‑ACATGGCCTTTC‑TTAATTTGCTACGCCCCGCCCCTACCCGAC‑CAAAc > 1:506381/1‑251 (MQ=255)tgATTACACAACCGCCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAAACTGACCGGCGGGGA‑ATTTCGGCCC‑CCC‑AA‑ACATA‑CCTTTTCTTAATTCGCCACGCCCCCCCCCCACCCGAc‑ccaa > 1:10582/1‑247 (MQ=255) aTTACACAACCGCCGAGCACCTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTTCCGCCC‑CCC‑AA‑ACATG‑CCTTTTATTAAATCGCTACACCCCCCCCCCAcccaaccacaaa > 1:623609/1‑240 (MQ=255) acaACCGCCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGCGA‑TTTTCGTCCC‑GCCCAA‑AAAT‑‑CCCTTCATTTAATCGCTACACCCCGCCCCCACCAACC‑CAAACAC‑CCca > 1:588299/1‑250 (MQ=255) aaCCGCCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GATCATCATGCCTGCGGCAATGGCGGGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGTTGA‑TTTGCGCCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCATAC‑CAAACAG‑CCcaaca < 2:89032/251‑1 (MQ=255) cgAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGG‑TTTGCGTCCC‑GCC‑CA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCCGAC‑CAAAAAA‑CCCAACAA‑ttttc > 1:201062/1‑249 (MQ=255) cgAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATT‑CCCTTCATTAATTTGCTACCCCCCCCCCCCACCAGAC‑CCAACAG‑CCCCACAA‑ATTcc > 1:184567/1‑250 (MQ=255) gAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGGGG‑TTTTCGGCCC‑GCC‑AA‑ACAAG‑CCTTTCATTAATTCTCTACGCCCCCCCCCCACCCGAC‑CCAACAA‑CCCCACAA‑ATTcac > 1:400109/1‑251 (MQ=255) gCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGAATTTG‑GTCCC‑CCC‑AA‑ACATG‑CCTTTCATTAAATCTCTACGCCCCCCCCCTAACAGAC‑CAAACAA‑CCCCACAA‑TTTccccc > 1:703020/1‑247 (MQ=255) aTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGG‑TTTGCGTACC‑GCC‑AA‑AAATA‑CCCTTCCTTAATATGCCACGCCCCCCCCCAACCCACC‑CAAACAGACCCAA‑AA‑TTTcacccatcc > 1:377663/1‑246 (MQ=255) gtttgctgctgtcACTGATGGTGATATTGTCGCGAACGGATTGCACGGTAATAATGCCTTCCGCTTGGCGTTCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATTTAGAACGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑CCATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTTACCACttcg < 2:666320/238‑4 (MQ=255) tCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGG‑TTTTCGTCCC‑GCC‑AA‑ACATT‑CCTTTCTTTAATTCGCTACGCCCCCCCCCTACCAGAC‑CAAACAG‑CCCCACAA‑TTTTACCACCGCG‑CACCGccc > 1:161044/1‑250 (MQ=255) tgttatggTCGCTAACGGAGGGCCCGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCGGCTGCAATGGCGTGGCTCGTGTTACGAATATCGATCGGCTTTTGGCCGAAATAAACCTGACCGTCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTCCGCCCCGCCCCTACCAGTC‑CAAACAG‑CCCAACAA‑TTTCCCCACTGCG‑AACCGCCAGACTTATTGGCGt < 2:872362/243‑1 (MQ=255) tGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑AAATG‑CCTTTTATTAAATCGCTACGCCCCCCCCCCCCCCGAA‑CAAACCG‑CCCCACAA‑ATTTACCCCCGCG‑AACCCCCCGACTTATTTGCGTacgcccc > 1:490387/1‑248 (MQ=255) gcgAACGGAGTGAACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGGTGGTCGATATAAACCTGACCGGCGGTGG‑TTTTCGTCCC‑CCC‑AA‑AAAAG‑ACTTTCATTAATTCGCTCCGCCCCCCCCCTTCCCGGCACAAACA‑‑CCCAACAA‑ATTTACCACTACG‑AACCGcccaaattatttgccgtcgcacgactg > 1:446081/1‑226 (MQ=255) cgAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACCTT‑CCCTTCCTTAAATCGCTACGCCCCCCCCCCTCCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCCCTTCG‑CACCGCCCGACttttttgcggtcgcaacccatg > 1:173799/1‑231 (MQ=255) ggAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGATTACGAATATCGCTCGGCTGTTGGTCGATATAAACATGACCGGCGGTGA‑GTTGCGTCCC‑GCC‑CA‑ACATG‑GCTTTTTTTTATTCGCTACGCCCCCCCCCCACCACAA‑CAAACAA‑CCCAACAA‑TTTCACCACCGCG‑AACCGTCACACTTATTGGCGTACGA‑ACGCC‑Tgggggtt > 1:243000/1‑246 (MQ=255) ggAATAAGTCCTTCCTCTTTGCCATCTTCCGG‑CATAAGCATCTGGCCTGCGGCAATGGCGTGCCTCGTTTAACGATTATCGATCGTCGGTTGGTGCATTTAAACCTTACCGCCGGTCA‑TTTCCTTCCC‑GCC‑AA‑ACATC‑CCTTTTATTAATTCTCTCCGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATc < 2:180352/251‑1 (MQ=255) aatGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTTCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTTCGCCCCCCCCCTACCAGAA‑CAAACAA‑CCCAACAA‑TTTTACCACAGCG‑AACCCCCCCACTTCTTGGCGTACGCCAC‑CC‑TGGTGCTTTCACAGCATccaaa > 1:446169/1‑246 (MQ=255) atGCCCTCCGTTTTGCGATCTCCCGGGCA‑GGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTGGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTCCGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACg < 2:490387/251‑1 (MQ=255) ccGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGGCCC‑GCC‑CA‑ACATG‑CCTTTCATTAATTTGCTACGCCCCCCCCCTACCACAC‑CAAAAAA‑CCCAACAAATTTC‑CCACCTCG‑AACCGCCCCACTTATTTGCGTACGC‑ACGCC‑TGGTGcctttccagactccaaacggaggagc > 1:343336/1‑226 (MQ=255) cTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTTCGTCCC‑GCC‑AA‑ACAAG‑CCCTTTATTAATTTGCTACGCCCCCCCCCTACCCGAC‑CCAACAG‑CCCCACAA‑TTTTACCACTGCG‑AAACGCCCGACCTATTGGCGTACGC‑ACGCC‑CGGGGCTTTtacaaccacaaaaactaagccgtcc > 1:296859/1‑230 (MQ=255) cTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTTCGGCCC‑GCC‑AA‑AAAAG‑CCTTTTATTTATTTGCTAAGCCCCGCCCCCAACAGAA‑CAAAAAA‑CCCCACAA‑ATTCAACACATCG‑AAACGCCCGAATTATTTGCGTAAAC‑AAGCC‑CGGGGGTTTCACAACATCAAggagtagacggtcc > 1:445430/1‑238 (MQ=255) tGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGctcctc < 1:327442/250‑1 (MQ=255) tCCGGGCA‑GAGCATCATGCCTGCGGCAAAGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATa < 1:375093/248‑1 (MQ=255) ccGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCCCCCCCACCCGAC‑CAAACAG‑CCCAACAA‑TTTTACCACTGCG‑AACCGCCCGACCTATTTGGGTACGC‑ACGCC‑CGGTGCTTTTACAGCATCAAAACGTAAGCGCTCCTCGCCCTAACt > 1:75561/1‑250 (MQ=255) gggcagagatacatgctggCGGAAATGGCGGGGCACGTATTACGAATAGCGATCGGCTGTTGGGCAATAAAAACCTGACCGGGGGTGA‑TTTGCGTCCC‑GCC‑AA‑AAACG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTAcg < 2:298258/233‑1 (MQ=255) atGCCGGCGGCAAGGGCTTGGCTCGGTTTACTAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTGCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGca < 1:312993/251‑2 (MQ=255) gCAATGGCGTGGCTCGGTTTACGAATATCGTTCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGCCCC‑GCC‑AA‑ACTTG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑c < 1:604147/251‑1 (MQ=255) atgtcGTGGCCCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGTTGA‑TTTGCGCCCC‑CCC‑AA‑ACATG‑CCTTTCATTAATTCGCTCCGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGcc < 1:415668/247‑1 (MQ=255) cGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCCCCCCTACCAGAC‑CAAACAA‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCCGACTTATTTGCGGTCGC‑ACGGC‑TGGTGCTTTTACAGCAACAAGACGGAGGCGCTTCTCTCCCTTACTAAGCGG‑TTGGCAGCCGTAGATATAGGCCAA‑GTCGCGcc > 1:170550/1‑251 (MQ=255) aCGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGG‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCCCCCCTACCAGAA‑CAAAAAG‑CCCAACAA‑TTTCACCCCTGCG‑GACCGCCAGGCTTATTGGCGTACGC‑ACGCC‑TGGGGGTTTCCCAGCATCAAGACGTAAGCGCTCCTCGCCATAACTACGCGGGTTGC‑AGCCGTTGATAT‑CGCCAAAGTcaccgccgaccc > 1:252538/1‑240 (MQ=255) atccgatcgTCTTTTGGTCGATATAACCCTGCCCGGCGGTGA‑TTTGCGCCCC‑GCC‑AA‑ACATG‑CCTTTCATAAATCCGCTCCCCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTCCACCCCTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGcc < 2:75561/248‑1 (MQ=255) accgttcggtgttgggtcaaaataACCCTGACCGGCGGGGA‑TTTGCGCCCC‑GCC‑AA‑AAATG‑CCTTACTTAAATTCGCTACGCCCCGCCCCTCCCAGAC‑CAAACAG‑CCCAACAA‑TTCCCCCCCTGCG‑AACCGCCAGACTTATTGGCGTACGC‑CCGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCt < 2:257435/230‑1 (MQ=255) cgGCTGTTGGTCGATATAACCCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCAcc < 1:539748/250‑1 (MQ=255) gctgtggttcgatgaaaccctcacgggcggTGA‑TTTGC‑TCCCATCC‑AA‑ACATT‑CCTTTCATTAATTCGCTCCCCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACGTCG‑AACCGCCAGACTTATTGGCGTACTC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAgc < 2:795684/226‑1 (MQ=255) gCTGTTGGTCGATATAAACCTGACCGGCGGTTA‑TTTGCGTCCC‑GCC‑AA‑ACAGG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGACCGACCATCGCCTGCACCAgc < 1:799319/251‑1 (MQ=255) tGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑CA‑ACATG‑CCTTTCATTAATTCGCTACACCCCGCCCCTACCAAAC‑CAAAAAA‑CACCACAA‑ATTCACCACCGCG‑AAACCCCCGACTTTTTAGCGTACCA‑ACCCCCTGG‑GCTTTCACAGCATCCAGAAGTAAGCGCCCCTCGCCACAACAACGCGG‑GTGCCAGACGTAGATAT‑CCCCAATGTGCCGCCCGACCACCGCCTGccaccgcac > 1:836481/1‑243 (MQ=255) tGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGACCC‑CCC‑AA‑AAATG‑CCTTTCATTAATTAGCTACGCCCCGCCCCTAACCGAC‑CAAAAAGGCCCACAAA‑TTTCAC‑ACTGCGGAACC‑CCAGACTTAATGGCGTACGC‑ACGCC‑CGGGGCTTTCACAACAACCAGACCTAGGCGCTCCACCGCAACACCACGCGG‑TTGCCAGCCGTAGCAAT‑AGCCCATGTTGCGCCCggacaacacccgcaacagcac > 1:836458/1‑231 (MQ=255) acccggcccgggggggA‑TTTGCGTCCC‑GCC‑AA‑ACAGC‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGAG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACct < 1:671645/236‑1 (MQ=255) aaCCTGACCGGCGGTGA‑TTTCCGCCCC‑GCC‑AA‑CCATG‑CCTTCCATTATTTCCCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCCCTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACct < 1:640170/251‑1 (MQ=255) aCCTGACCGGCGGTGA‑TTTGAGTCCC‑GCA‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACGGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑GGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctg < 1:619794/251‑1 (MQ=255) ccTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑TCATG‑CCTTTCATTAATTCGCTACCCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctgc < 1:403510/251‑1 (MQ=255) gggTGA‑TTTGCTCCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTCCGCCCCGCCCCTACCAGAC‑AAAACAG‑CCCAACAA‑TTTCCCCACTGCT‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCg < 1:794931/250‑1 (MQ=255) gggTGA‑TTTGCGTCCC‑‑CC‑AACACATG‑CCTTCCATTAATGCGCTCCGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑GTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCg < 2:645381/250‑1 (MQ=255) ggTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCgg < 1:510655/251‑1 (MQ=255) tGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTAACAGCCTCAAGACGTAAGCGCTCCTCGCCCTAACTACGCGG‑TTGCCAGCCGTAGATAT‑AGCCAATGTCGCGCCCGACCATCGCCCGCCCCAGCCGGTCGGGGTCAACCTGCTCCATACCGGTAAGGGt > 2:275199/1‑251 (MQ=255) cGTCCC‑ACC‑AA‑ACATC‑CCTTACATAAATTCGCAACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑GGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCGGTAAAGGttt < 2:201062/251‑1 (MQ=255) ggcgcccctccaaacactcttttCTTTAATTCTCTAGCCCCCCCCCCTCCCAGCC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑ACCCGCCAGACTTATGGGCGTACGC‑ACGCC‑TGGTGCTTCCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTTCATATCGGTAAAgg < 2:252538/230‑1 (MQ=255) ccc‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑GCGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCAACAGCGCGTCGTGGTCAACCTGCTGCATATCGGTAAAGGTTTTg > 1:415196/1‑250 (MQ=255) cATG‑CCTTTCATTAATTCACTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTATGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCACCCTGCTGCATCTCGGGAAGGGGTTTGACATAACGTc > 2:274602/1‑251 (MQ=255) aTTAATCCCCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCGGTAAAGGTTTTGACATAACGTCCATCTTTaaa < 1:819715/251‑1 (MQ=255) ttAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTAGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTTCATATCGGTAAAGGGTTTGACATAACGTCCATCTTTaa > 2:585361/1‑249 (MQ=255) taatcctcTACGCCCCGCCCCTCCCGGAC‑CAACCAG‑CCCAACAG‑TTCCACCCCTGCG‑AACCGCCAGACTTATTGGCGGACGC‑ACGCC‑TGGTGCTTTCCCAGCATCAAGACGTAGTCCCTCCTCTCCATAACTACTCGG‑GTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTACTGCATATCGGTAAAGGTTTTGACATAACGTCCATCTTTAAAg < 2:69535/243‑1 (MQ=255) aatttcccccccccccgccctTACCAAGC‑CAACCAC‑CCAAACAA‑TTACACCACTGCA‑GACAGCCAGCCTGATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGGCGTATGCGCTCCTCGCCATAACTACGCGG‑GTGCGAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCGGTAAAGGTTTTGACATAACGTCCATCTTTAAAGa < 2:588299/239‑1 (MQ=255) aaTTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAAGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATTTCGGGAAAGGTTTTGACATAACTCCCATCTTTAAAGAc > 2:858418/1‑251 (MQ=255) cGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAAGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCAGACAATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCGGGAAAGGTTTTGACATAACGTCCATCTTTAAAGACAGt > 1:587147/1‑250 (MQ=255) tACGCCCCGCACCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCCCTGCG‑ACACGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGGGCTTTCACAGCCTCAAGCCGTAAGCGCTCCTCGCCATAAATACGCGG‑TTGCCAGCCGTAGATAA‑CGCCAATGTCGCCCCCGCCCATCGCATGCGCCAGCGAGACGTGGTCAAACTGCTGCATATCAGGCACGGTTTTCACATAACGTCCAACTTGAAAGACCGTAAtt > 2:213949/1‑250 (MQ=255) gccccgccccTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGAAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCCCCAGCGCCTCGTGGTCAACCTGCTGCATATCGGTAAAGGTTTTGACATAACGTCCATCTTTAAAGACAGAAATGGc > 2:216939/1‑250 (MQ=255) | TGATTACACAACCGCCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCA‑GAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGA‑TTTGCGTCCC‑GCC‑AA‑ACATG‑CCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGAC‑CAAACAG‑CCCAACAA‑TTTCACCACTGCG‑AACCGCCAGACTTATTGGCGTACGC‑ACGCC‑TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGG‑TTGCCAGCCGTAGATAT‑CGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCGGTAAAGGTTTTGACATAACGTCCATCTTTAAAGACAGTAATGGC > NC_000913/1983959‑1984436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |