| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,415,395 | 0 | G | A | 25.4% | 122.8 / 12.2 | 64 | R664R (CGC→CGT) | recE | exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| Reads supporting (aligned to +/- strand): ref base G (13/34); new base A (16/0); total (29/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.85e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGACGGCACCGACACAAAATTCCTGTTTCAGGATCTTCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTAATTCTCATTCGAAATTCCGTAATAAATACCTGGCTCTATGTCTTCTACGATTACGGGATCTGCGACTTCG > NC_000913/1415147‑1415635 | ggACGGCTCCGACACAAAATTCCTGTTTCAGGATCTTCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCg < 1:294415/251‑1 (MQ=255)ggACGGCCCCGAAACAAAATTCCTGTTTCAGGATCTTCCCATTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCg < 2:498803/251‑1 (MQ=255)ggACGGAACCGACACAAAATTCCTGTTTCAGGATCTTCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTGTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCg < 2:60828/251‑1 (MQ=255) ccactaaaTTCCTGTTGCAGGACCTCCCCATAAAATTGAGTATTCAGCGTTGCCGGCGCTCTCCACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACTTGAGTTCAATTTTCCGGCCTTCTGCCGCAGTGATAACCGTGTTTCCTGTGCTTGCGCATTCCATCAGAAACTCTTTCCCTTCAACTTCTCCGGCGTTTGTACGGCGG‑GT‑AAATT‑CATGTGCTACGATAAAGCGGTTACTGAAtt < 2:740699/246‑1 (MQ=255) aTTCCTGTTTCAGGATCTTCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTTCGGTAAAACGGGTTCTGAAttctt‑ctgg > 1:722073/1‑248 (MQ=255) tCCTGTTTCAGGATCTTCCCAGTAAATTGAGGAGTCAGCGTGTCAGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGATTTCAATGTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTGCGATAAAGCGGTTACTGAATTCTT‑CCGGt < 1:631270/250‑1 (MQ=255) tCAGGATCTTCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTa < 1:152076/250‑1 (MQ=255) cAGGATCTTCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTAcc < 1:372757/251‑1 (MQ=255) tCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGc < 1:67586/247‑1 (MQ=255) tCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCa < 1:507118/248‑1 (MQ=255) tCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTGTGATACATGAGTTCAATTTGCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCGTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑t < 2:303573/250‑1 (MQ=255) tgatgaTTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTGCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGtt < 1:113102/250‑1 (MQ=255) atgatTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCt < 1:225040/251‑1 (MQ=255) gCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTTAATTCTT‑TCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAAtag > 1:491326/1‑247 (MQ=255) caacaaGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑TAATT‑TAAGTGCTACGGTAAAGAGGGTACTGGATTTTT‑TCGGGT‑CC‑AGAACCCCGCCG‑TGG‑AAAG‑CAGGTCCTAAAACGAGGGTGTTTGTCtttttg > 1:687559/1‑248 (MQ=255) acaaGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTgtg‑gt < 1:733447/251‑1 (MQ=255) aaGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTACGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGTCGG‑TTTAAATA‑CAG‑TGCTTCGATTAAGCCGTTACTGATTTCTT‑TCGGTT‑CT‑AGTACCCCGCTG‑TGG‑GAGG‑CACTTCCTACATAGAGCACTTTTGTCtttttgtgtg > 2:12/1‑244 (MQ=255) gCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATTCATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCTTTTTGCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTGTTTGTCTTTGTG‑GT‑GT‑cc < 1:275871/251‑1 (MQ=255) ccATTTCCCCAGCGGCAAAGCCATAACGCTCTGATACATGAGTTCAATTTTCCGGCCGTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGCTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGTCAG‑TGG‑AAAG‑CAGTTCCTAAAACGAGCGTTTTTGTCTTTGTG‑TT‑GT‑CCa < 2:408408/251‑1 (MQ=255) ccATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCa < 1:109367/251‑1 (MQ=255) tGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAAAT‑CAGGGGCTACGTTAAAACGGTTTCTGAATTTTT‑TCCGTT‑CA‑AGAAACCAGGAG‑TGG‑GAAA‑CAGTTCCTAAAACGGGCGTTTTTGTTTTTGTG‑GT‑GT‑cccaggg > 1:678136/1‑246 (MQ=255) cccAGCGGCAAAGCCATAACTCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGc < 1:331843/251‑1 (MQ=255) cccAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑TCGGTGCTACGATAAAACGGTTACTGAATTCTT‑CCGGGT‑CA‑AGGACCCGGCAG‑TGG‑GAAG‑CAGGTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑gggggg > 1:461558/1‑250 (MQ=255) aaagactgaatgCTTTGATTCATGAGTTCAATTTTCCGGTCTTTTTCCGTAGTGATAACCGTTTTTCCGGTGCTTGCGCAATCCATCAGAAACGCTTTCTCTTCTTCTTTGACGGCGTTTGTTCGGCGG‑GT‑AAATT‑CAGGTGCTACGATAAATCGGTCACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAT‑TTG‑AAAG‑CAGTTCCTAAATCGATCGTTTGTGCCTTTGTG‑GT‑GT‑CCC‑C‑GGTGGC‑ATTTTTAc < 2:719968/239‑1 (MQ=255) aaaGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑TAGGTGCTACGATAAAACGGTTACTGAATTCTT‑CCGGGT‑CA‑AGTAACCGGCAG‑GGG‑AAAA‑CAGTTCCTTAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACg > 1:642100/1‑251 (MQ=255) cATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑TAATT‑TAGGTGCTACCGTAAAACGGTTACTAAATTTTT‑CCGGTT‑TA‑AGTACCCGGCAG‑TGG‑GAAG‑CAGTTTCTAAATCGCGCGGTTTTGTCTTTTTG‑GTTGT‑C‑A‑C‑GGGGGC‑ATTTTTTCGCcac > 1:578454/1‑250 (MQ=255) aTAACGCTTTGATAAATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGGGTT‑CAATT‑AAGGTGGAAC‑ATAAAACAGTTTTTGGATTCTT‑CCGGGT‑CC‑AGTACCCCGCCGCGGG‑AAAG‑‑GGTTCCGTCATCCAGCGTTTTTTTCTTTGTG‑GT‑TG‑CCC‑C‑GGGGGCGAttttttgccccc > 2:714354/1‑243 (MQ=255) tAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑TAATT‑CAGGTGCTACGATAAAGCGGTTACTGTATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CCGTTTCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACaa > 1:595994/1‑250 (MQ=255) cGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑TAATT‑CAGGTGCTACGCTAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTTTCTTTTTG‑GG‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAatat > 1:850282/1‑251 (MQ=255) cTTTGATACATGAGTTCAATTTTCCGGCATTCATCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑GT‑TAATT‑CAGGTGCTCCGATAAAACGGGTACTGAATTATT‑CCGGAT‑CA‑AGAACCCGACCG‑TGG‑AAAG‑CAGTTCCTCAATCGAGCAGTTTTGTCTTT‑TGTGT‑GT‑CAC‑C‑GGGGGC‑ATTTTTACGCCACAAataaa > 1:751839/1‑248 (MQ=255) tttGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGAACGGCGG‑TT‑AAATTTCTGG‑GCTCCGATAAAGAGGGTACTGAATTCTT‑CCGGTT‑TA‑AGTACCCGGGAG‑GGG‑AAAG‑CAGTTACTCAATCGGGGGGTTTTGTCTTTTTG‑GA‑GT‑CCAAG‑GGGGGC‑TTTTTTGC‑CCACAAATATAgg > 1:48459/1‑250 (MQ=255) gATACATGAGTTCAATTTTCCGGCCTTCCTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTTCCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGcc < 2:15669/251‑1 (MQ=255) tACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TTTAATTT‑CGGGTG‑TACGCTAAAACGGGTACTGAATTCTT‑CCGGCT‑CA‑AATACCCCGCAA‑GGG‑AAAG‑CAGGTACTAAATCGCGGGTTTTTTTCTTTTTG‑GT‑GT‑CCA‑C‑CGGGGC‑Attttttcccccccaaaatattgtcgg > 2:299546/1‑230 (MQ=255) cATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGAGCATTCCATCAGAAACGCCTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAAGTCTT‑CCGGTT‑CA‑AGTTCCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAg < 2:686052/251‑1 (MQ=255) aTGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGt < 1:162650/251‑1 (MQ=255) cAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑TAGGTGCTACGGTAAAACGGATAATGAATTCTT‑CCGGGT‑CC‑AGTAACCGGCAG‑AGG‑GAAA‑CAGTTCCTAAAACGAGCGTTTTTGTCTTTGTG‑GT‑TG‑CCA‑CCGGGGGC‑‑TTTTTACGCCACAAATTTAGAGCCgggggaacagc > 1:838049/1‑241 (MQ=255) aTTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGGGTT‑AATTT‑CAGG‑GGTCCGATAAAACGGTTTCTGAATTCTT‑TCGGTTTCA‑A‑TACCCGGCAG‑GGG‑AAAGGCAGT‑CCTCAATCCAGCGTTTTTTTCTTTGTA‑GG‑GT‑CCC‑C‑AGGGGG‑ATTTTTACGTCCCCAATATAGTGTCGGAggattaacaa > 2:186908/1‑241 (MQ=255) cGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGCAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑TAATT‑CCAGTGCTACCATCAAGAGGGTACTGAATTTTTTCCGATT‑CA‑‑GGACCCCGCAG‑CGGCAAAG‑CGGTTC‑TCAATCGTACGGTTTTTTCTTTTTG‑GG‑GT‑CCC‑C‑GGGGGC‑CTTTTTTCGCCACAAATATCGTGCCCGAGTGTCCGTAATGTCATc > 1:483174/1‑251 (MQ=255) ggCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAACGGGTACTTAATTCTT‑CCGGGT‑CA‑AGTACCCGGCAG‑GGG‑AAAA‑CAGTTCCTAAATCGAGCGGTTTTTTCTTTTTG‑GT‑GT‑CCC‑C‑GGGGGC‑CTTTTTACGCCACAAATATAGTGCCCGGGTATTAGCAATGTCATCg > 1:734974/1‑251 (MQ=255) cttcttCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑TAATT‑CTAGTGCTACGATAAAACGGTTACTGAATTCTT‑CCGGGT‑CA‑AGTACCCCGCAG‑TGG‑GAAG‑CAGTTCCTTAATCGAGCGTTTTTGTCTTTTTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCCACAATGTCATCGAGc > 1:23450/1‑251 (MQ=255) tcttcCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑TAATT‑CAGGTGCTACGGTAAAGCGGGTACTGAATTTTT‑CCGGTT‑CA‑AGTACCCGGCAG‑GGG‑AAAG‑CAGTTCCTTAATCGAGCGTTTTTTTCTTTTTG‑GT‑GT‑CCA‑C‑GGGGGG‑CTTTTTTCGCCACAAATATAGTGCCg > 1:504081/1‑226 (MQ=255) tcttcCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCg < 2:504081/226‑1 (MQ=255) gCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CCGGTGGTTCGATAAAGCGGTTACTTTATTCTT‑CCGGTT‑CCCATAACCCGGGGG‑GGG‑AAGA‑AAGTTC‑TAAATCGCGCGTTTTTTTCTTTGTG‑GG‑GT‑GCC‑C‑GGGGGG‑CTTTTTTCGCCCCAAAAATAGTGGCGGGGTATCCGCCATGTCATCgggatagattgg > 1:372933/1‑240 (MQ=255) gCAGTGATAACCGTTTGTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTG‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGGTGTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCt < 2:372933/244‑1 (MQ=255) aTAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AACTT‑CAGGTGCTACAATAAAAAGGTTTCTGAATTTTT‑CCAGTT‑CA‑AGTACCCCGGAG‑AGG‑AAAG‑AACGTCCTAACACGCGCGTATTTTTCTTTGTG‑AG‑GTACCC‑G‑GGGGGG‑ATTTTT‑CAGCACAAATATATTGCCGTAGTAACACCCATATCATCGAGATGAGACATACtaat > 1:316660/1‑248 (MQ=255) aCCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATAcc < 1:433324/251‑1 (MQ=255) ccGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCg < 2:734974/251‑1 (MQ=255) gTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCTG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCggg < 2:651459/251‑1 (MQ=255) gtgCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑GAATT‑CATGGGCTTCGGTAAAACGGGTTCTGAATTTCT‑CCGGTT‑TA‑AGTACCCGGCCG‑TGG‑GAAG‑CAGTTCCTAAATCTAGCGTTTTTGTCTTTTTG‑GG‑GT‑CCA‑C‑GGGGGC‑CTTTTTACGCCACCAATATAGTGCCGGGGTATCCGCCATGTTATTCAGCTGCGACTTACTGGAACCCGGACCcgcggg > 1:238148/1‑249 (MQ=255) tgCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCcaca < 1:138651/186‑1 (MQ=255) gCTTGCTCAGTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTGACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTgg < 2:687559/250‑1 (MQ=255) gCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTgg < 1:835685/250‑1 (MQ=255) gCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGGGCTCCGCTAAAAAGGGTAATGCATTATT‑TCTGGT‑CA‑AGTACCCGGCAG‑GGG‑AAAA‑CAGTACCTACATTGCGCGCTTTTGTCTTTTTG‑GG‑GG‑TCA‑C‑GGGGGC‑ATTTTTTCGCCACAAAAACAAGGGAGGAGTATCAACAATGTCATCGAGGTGAGACTTaacgataaccggaaccgcggtgg > 1:427729/1‑229 (MQ=255) tGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTa < 1:246329/249‑1 (MQ=255) gtcgcATTCCATCAGAATCTCTTTTTCTTCTTCTTTTACGGCGTCTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTGACTGAATTCTT‑CCGGTG‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GTGGGC‑ATTGTTACGCCACAAATATAGTGCCGGAGTCTCAGCAATGTCATCGAGCTTAGACTTACTGATACCGGGACCCGAGCGGTAAt < 2:779161/249‑1 (MQ=255) gcATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGGGCTACGATCAAGCGGTTACTGGATTATT‑CCGGGT‑CA‑AGTACCCGGCCG‑CGG‑AAAG‑CAGTTCCTAAATCGAGCGGTTTTGTCTTTGTG‑GT‑GT‑CCC‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGGCGGAGTATCCGCAATTTCATCGCGCTGAGACTTACTGATACCGGGGCCCGCGAGGTAATtct > 1:36827/1‑251 (MQ=255) ttCTCTTCATCATTGCCGGCGTTTGTACGGCGG‑TT‑AAATG‑CAGGGGCTACGATAAAGCGGTTACTGAAGTCTA‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCGAAATCGAGCGTTTGGGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGTCACAAATATAGTGTCGGAGTATCAGCAAGGTCATCGTGCAGAGACTTACTGATTCCGGGGCCGGCGTGGTAATTCTCATTCGAGAGTCCGtaat < 2:671108/250‑1 (MQ=255) tCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTTCCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTAATTCTCATTCGAAATTCCGTAATAAATACCTGGctct < 2:18470/250‑1 (MQ=255) tCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAACGGTTTCTGAATTCTT‑CCCGGT‑CC‑AGTACCCGGCAG‑GGG‑GAAG‑CAGTTCCTAAAACGAGCGTTTTTGTCTTTTTG‑GT‑GT‑CCC‑C‑GGGGGC‑CTTTTTTCGCCCCAAATATAGTGCCGGGGTATCAGCAATGTCATCGAGCTGGGACTTACTTATACCCGGACCCCCGTGGGAATTTTTATTCGAAATTCCGTTATAAAAACCTGGctctt > 1:88757/1‑250 (MQ=255) ccGGCGTTTGTACTGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTAATTCTCATTCGAAATTCCGTAATAAATACCTGGCTCTAt < 1:867721/251‑1 (MQ=255) ggCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTAATTCTCATTCGAAATTCCGTAATAAATACCTGGCTCTATGt < 1:625312/251‑1 (MQ=255) cGTTTGTACGGCGG‑AT‑AAATT‑CAGGTGATACGGTAAAGCGGGTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTTAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑CTTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCCTCGAGCTGAGACTTACTGATACCGGGGACCGCGGGGTAATTCTCCTTCGAAATTCCGTAATAAATAACTGGCTCCATGtct > 1:684315/1‑251 (MQ=255) ggTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTAATTCTCATTCGAAATTCCGTAATAAATACCTGGCTCTATGTCTTCTACGATTACGGGATCTGCGAc > 1:246833/1‑251 (MQ=255) cTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTAATTCTCATTCGAAATTCCGTAATAAATACCTGGCTCTATGTCTTCTACGATTACGGGATCTGCGACTTCg > 1:847674/1‑251 (MQ=255) | GGACGGCACCGACACAAAATTCCTGTTTCAGGATCTTCCCAGTAAATTGATGATTCAGCGTGTCCGGCGCTTTCAACAAGCCATTGCCCCAGCGGCAAAGCCATAACGCTTTGATACATGAGTTCAATTTTCCGGCCTTCTTCCGCAGTGATAACCGTTTTTCCTGTGCTTGCGCATTCCATCAGAAACGCTTTCTCTTCTTCTTTTCCGGCGTTTGTACGGCGG‑TT‑AAATT‑CAGGTGCTACGATAAAGCGGTTACTGAATTCTT‑CCGGTT‑CA‑AGTACCCGGCAG‑TGG‑AAAG‑CAGTTCCTAAATCGAGCGTTTTTGTCTTTGTG‑GT‑GT‑CCA‑C‑GGGGGC‑ATTTTTACGCCACAAATATAGTGCCGGAGTATCAGCAATGTCATCGAGCTGAGACTTACTGATACCGGGACCCGCGTGGTAATTCTCATTCGAAATTCCGTAATAAATACCTGGCTCTATGTCTTCTACGATTACGGGATCTGCGACTTCG > NC_000913/1415147‑1415635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |