Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,704,350	Δ390 bp		blr	blr

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1704350	1704739	390	59 [1]	[2] 59	blr	blr

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1704349	1 (0.010)	57 (0.710)	55/486	0.4	97.4%	intergenic (‑41/‑202)	ydgJ/blr	putative oxidoreductase YdgJ/beta‑lactam resistance protein
	?	NC_000913	1704740 =	2 (0.020)					intergenic (+64/‑209)	blr/cnu	beta‑lactam resistance protein/H‑NS‑ and StpA‑binding protein

AATGACAATCAGGTCTATGTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TATCCTTTACCCACGCTCAACAGTTTAATAACCTGCCAGCAATAAGGGATGTTGTTTAACTTAAGTCAAAAAAATAGCGAATTTTCCAACGACAAAAGCTAAATATCGCAAAAACCTCAGTAAAAATCTTGCTGGAGCTATTATTGCTAAGTAACATTTACCCCCTGAAGTTAATGGATCAATCAAGAGAGATGTGGGCTGTAATGAATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTT  >  NC_000913/1704099‑1704596                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                        aaTGAAAATCAGGTCTATTTTGGGACCTTTAAAAGGATGCTTCGGCTCAGAGAAAACCGTAGCCGTTGGCCAGGCGGTTTTTACTTGTGTTTCATCACG‑‑GCTGGGGA‑TTCCCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑Ta                                                                                                                                                                                                                                                         <  1:809197/251‑1 (MQ=255)       aaTCGGGTCAATTTTGGGATCGTTAAACAGATTCTTCGGCTCAGAGACAACCTTAACCTTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccag                                                                                                                                                                                                                                                   <  1:240808‑M1/251‑7 (MQ=255)        aTCAGGTCTATGTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccagg                                                                                                                                                                                                                                                  >  1:194018‑M1/1‑244 (MQ=255)          cAGGTCTATGTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccagga                                                                                                                                                                                                                                                 >  2:168727‑M1/1‑242 (MQ=255)                        gATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGCAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGACTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattttcttgtt                                                                                                                                                                                                                                  >  2:185170‑M1/1‑228 (MQ=255)                           cGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcga                                                                                                                                                                                                                               <  1:157430‑M1/251‑27 (MQ=255)                                  cAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTTCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGCCAC‑TAaacccggaatttattatcttgttcgatgttgtt                                                                                                                                                                                                                        >  2:563765‑M1/1‑218 (MQ=255)                                          tcgtctcaaAGACAACCGTCACCTGTGGCCAGTCGGCTTTTACTTTTGTTTCATCCCT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgatt                                                                                                                                                                                                                 <  1:844481‑M1/246‑41 (MQ=255)                                          tCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGCTGGCTATTTGTCAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattg                                                                                                                                                                                                                >  2:473124‑M1/1‑210 (MQ=255)                                              cTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgat                                                                                                                                                                                                                  >  1:850664‑M1/1‑206 (MQ=255)                                              cTCAGAGACAACCGAAACCGTTGGCCAGGGGGCTTTTACTTGTGTTTCATCACT‑‑GCGGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgat                                                                                                                                                                                                                  <  2:850664‑M1/245‑40 (MQ=255)                                                   agccacccgtacccgtgggccaGTCGGTTTTTTCTTGTTTTTCATCGCT‑‑GGTGGAGA‑TTACCGCCAGTGCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggata                                                                                                                                                                                                       <  1:403882‑M1/245‑51 (MQ=255)                                                   agaCAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggat                                                                                                                                                                                                        >  1:433583‑M1/1‑201 (MQ=255)                                                           gtaaccgtTGGCCAGTCGGTTTTTATTTTTGGT‑‑ATGACTCCGCTGGAGA‑TTACCGCCATTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTTCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCACATGTCATTGCCTCTCAGTGATGTATGATGGCTATTTGACAC‑TAaaccaggaatttattagcttgttcgatgttgttggtgattgtcagggatagtaaagcg                                                                                                                                                                                               <  2:394202‑M1/251‑59 (MQ=255)                                                            taaccgtTGGCCAGTCGGCTTTTACTTTTGATTCATCACT‑‑GATGGAGA‑TTACCGCAAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGAATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGTAGAATGATGGCTATTTGA‑ACATAaactaggaatttattatcttgttagttgttgttggtgattgttagggatagtaaatcgc                                                                                                                                                                                              >  1:502225‑M1/1‑192 (MQ=255)                                                               cagttgGCCAGTCGGTTTTTTCTTTTTTTTCATCTCT‑‑GCTGGATA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgagtgtcagggatagtaaagcgcgtt                                                                                                                                                                                           <  2:606552‑M1/249‑63 (MQ=255)                                                                      ccAGTCGGCTTTAACTTTTGTTTCATCACT‑‑GCTTGAGA‑TTACCGACAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACACAACACGGCTGTTGTCGCTCATGTCATTGCCTCTCATTGCAGTATGCTGGCTATTTGACAC‑TAacccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttt                                                                                                                                                                                    >  1:630590‑M1/1‑182 (MQ=255)                                                                        aGTCGGCTTTTACTTTTGTTTCATCCCT‑‑GCTGGAAA‑TTTCCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttc                                                                                                                                                                                  <  1:173848‑M1/251‑72 (MQ=255)                                                                        aGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttc                                                                                                                                                                                  >  1:501699‑M1/1‑180 (MQ=255)                                                                           cggtttttacttTTGTGTCATCACT‑‑G‑TGGGGACTTACCGCCAGTTCCGGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAAACAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccatgaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcag                                                                                                                                                                                <  1:816130‑M1/246‑74 (MQ=255)                                                                           cGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCGTGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttc                                                                                                                                                                                  >  1:787949‑M1/1‑177 (MQ=255)                                                                            ggCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGGTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggcgattgtcagggatagtaaagcgcgttactcttttaag                                                                                                                                                                                >  1:172669‑M1/1‑176 (MQ=255)                                                                                 ttACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TATcc                                                                                                                                                                                                                                                      >  1:48999/1‑174 (MQ=255)                                                                                  tACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcg                                                                                                                                                                                                                                >  1:290797‑M1/1‑170 (MQ=255)                                                                                    tactttggtctcaccctggtaggaga‑tgaccgccagttcctgccCGGGCGTGCCCGCAATCAGGGTCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGTATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtt                                                                                                                                                                         <  2:60242‑M1/229‑81 (MQ=255)                                                                                         gTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCACTCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttaagagcagtttttcatcc                                                                                                                                                                 >  2:69035‑M1/1‑163 (MQ=255)                                                                                           ttCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatcc                                                                                                                                                                 >  1:372791‑M1/1‑161 (MQ=255)                                                                                           ttCATCACG‑‑GCTGGAGA‑TTTCCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatcc                                                                                                                                                                 <  2:372791‑M1/249‑89 (MQ=255)                                                                                            tcatcctt‑‑gctggaga‑tttCCGCCAGTTCCTGCCCGGGCGGGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggagttttttatcttgttcgatgtggttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccct                                                                                                                                                               <  1:435674‑M1/243‑91 (MQ=255)                                                                                                      tgttggagttgaccgccagtttcTGTCCGGGCGTTCCCGCAATCAGGGGCGCATGGAATGTTTTGCTCGCATAACCATACCCAATCAACCCAACTCGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgtttttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcattcctgaatat                                                                                                                                                         <  2:745531‑M1/238‑97 (MQ=255)                                                                                                         ggAGA‑TTACCGCCAGGTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagctcgttactcttttcatagcagtttttcatccctgaatatttgcc                                                                                                                                                    <  1:335680‑M1/250‑102 (MQ=255)                                                                                                                tACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATTGAAGGTTTTGCCCGCATAACCATACCCAAGCAACCCAACACGGAGGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttctatgttgttggtgattggcagggatagtaaagcgcgttactcttttcagagcagtgtttcatccctgaatatttgccatcagc                                                                                                                                              <  2:642978‑M1/250‑108 (MQ=255)                                                                                                                     ccAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattc                                                                                                                                        <  1:161978‑M1/251‑114 (MQ=255)                                                                                                                             tGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattatt                                                                                                                                >  1:146689‑M1/1‑130 (MQ=255)                                                                                                                               cccGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttgatgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgt                                                                                                                              <  2:265483‑M1/251‑124 (MQ=255)                                                                                                                                ccgggtgtgtcctcaactaggggcgcatggaaggtttTGCTCGCATAACCATACCCAATCAAACCAACACGGATGTTGTCGCTCATGTCAGTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatcccggaatatttgccatcagcgcattcttattattgta                                                                                                                             <  2:156728‑M1/233‑125 (MQ=255)                                                                                                                                        gCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacaca                                                                                                                     <  1:557553‑M1/251‑133 (MQ=255)                                                                                                                                        gCCCGCAAGCAGGGGCTCATTGAATGTTTTGCTCTCATAACCATACCCAATCAACCCATCACGGATGTTGTCGCTCATGTCATGGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgagtatttgccatcagcgcattcttattattgtaataacac                                                                                                                      <  2:555635‑M1/250‑132 (MQ=255)                                                                                                                                                         cATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtg                                                                                                    <  1:231009‑M1/251‑150 (MQ=255)                                                                                                                                                                     tGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataactcaagcgttcacttttggtgaaattttatcat                                                                                        >  1:88798‑M1/1‑90 (MQ=255)                                                                                                                                                                      gCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcat                                                                                        <  1:473124‑M1/250‑162 (MQ=255)                                                                                                                                                                            aTAACCATACCCAATCAACCCAACACGGATGGTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaat                                                                                 <  2:362792‑M1/251‑169 (MQ=255)                                                                                                                                                                                  aTACCCAATCAACCCAACATGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacc                                                                           <  2:433583‑M1/251‑175 (MQ=255)                                                                                                                                                                                    aCCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataataccta                                                                         <  2:271612‑M1/251‑177 (MQ=255)                                                                                                                                                                                               ccAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggt                                                               >  1:863145‑M1/1‑64 (MQ=255)                                                                                                                                                                                                 aaCACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGCCAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagccgtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtatt                                                            >  1:549619‑M1/1‑62 (MQ=255)                                                                                                                                                                                                  acacGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgacattttatcatcactaataatacctacccctttgttatt                                                            >  2:307482‑M1/1‑61 (MQ=255)                                                                                                                                                                                                   cacGGATGTTGTCGTCCAAGTCATTGCCTCTTAGTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttctatgttgttggtgattttcagggagagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttctcttttggtgaaattttatcatcactaataattcctaccccttcggtattaa                                                          <  2:4125‑M1/251‑192 (MQ=255)                                                                                                                                                                                                    tcggctgttgtcgctcTTGTCATTGCAACTCATTGAAGTATGATGGCTCTTAGACAC‑TAaaccaggattttattatcttgttagatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatacctgaatatatgcaatcagcgcattcatattattgtaataacacaagcgtacccttttggtgaaattttatcatcactaataatacttaaccctttggtattaat                                                         >  2:91435‑M1/6‑59 (MQ=255)                                                                                                                                                                                                    acGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaacaaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacacctttggtattaat                                                         >  2:184736‑M1/1‑59 (MQ=255)                                                                                                                                                                                                     cGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaatt                                                        >  2:753912‑M1/1‑58 (MQ=255)                                                                                                                                                                                                        aTGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattatt                                                     >  1:344746‑M1/1‑55 (MQ=255)                                                                                                                                                                                                               cGCTCATGTCATTGCCTCTCATTGAAGGATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatgga                                              <  2:194018‑M1/251‑204 (MQ=255)                                                                                                                                                                                                                                  cATTGAAGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttc                              <  1:168727‑M1/248‑220 (MQ=255)                                                                                                                                                                                                                                        aGTATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactact                     >  1:802751‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                                          tATGATGGCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactacttt                   >  1:177888‑M1/1‑21 (MQ=255)                                                                                                                                                                                                                                                ggCTATTTGACAC‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagagcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactacttattaaaa             <  1:525583‑M1/251‑237 (MQ=255)                                                                                                                                                                                                                                                          cac‑TAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactacttattaaaatttcgcaaa    >  1:489451‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                                           ac‑TAaaccaggaagttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactacttattaaaatttcgcaaaat  <  1:99335‑M1/251‑248 (MQ=255)                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                        AATGACAATCAGGTCTATGTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACT‑‑GCTGGAGA‑TTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACAC‑TATCCTTTACCCACGCTCAACAGTTTAATAACCTGCCAGCAATAAGGGATGTTGTTTAACTTAAGTCAAAAAAATAGCGAATTTTCCAACGACAAAAGCTAAATATCGCAAAAACCTCAGTAAAAATCTTGCTGGAGCTATTATTGCTAAGTAACATTTACCCCCTGAAGTTAATGGATCAATCAAGAGAGATGTGGGCTGTAATGAATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTT  >  NC_000913/1704099‑1704596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑