New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	607765 =	31 (0.380)	8 (0.100)	8/488	4.8	20.5%	noncoding (28/60 nt)	sokE	small RNA SokE
	?	NC_000913	= 3722075	NA (NA)					noncoding (1443/1443 nt)	IS150	repeat region
Rejected: Coverage evenness skew score above cutoff.

CAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAAT  >  NC_000913/607518‑608007                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    cAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGTACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCt                                                                                                                                                                                                                                                  <  2:847422/251‑1 (MQ=255)       gACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAATCCCCAGGAGATATTTCTATCAACCCTGGGGCt                                                                                                                                                                                                                                            <  1:731595/251‑1 (MQ=255)                  gCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCaaa                                                                                                                                                                                                                                <  1:20878/251‑1 (MQ=255)                  gCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCaaa                                                                                                                                                                                                                                <  1:849776/251‑1 (MQ=255)                     gtgctgacttggttctaagaaTTATGACGATTGAGTCAGTCAGAAAAAAACTGGTTCAGCTTCAGTTGATTAAATGAGGATTGTGAATGCCTAAACAGGACTCACCGT‑AGAAAAAAACATCTATTTTGTTGATGAATGGTAAGATAATGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCATGAGATATTTCGATCAACCCTGGTGATGCCA‑CTCCAAcccc                                                                                                                                                                                                                             <  2:416648/235‑1 (MQ=255)                      ggCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTgtactgcacccattttgttgg                                                                                                                                                                                                                             <  1:363027/250‑21 (MQ=255)                                        aaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGt                                                                                                                                                                                                          <  2:441732/251‑1 (MQ=255)                                             tGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACGCACTTT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCct                                                                                                                                                                                                      <  2:274979/250‑1 (MQ=255)                                                 gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCttcttc                                                                                                                                                                                                 <  1:384004/251‑1 (MQ=255)                                                                       cGGGTTCAGCTTCAGTTTATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATg                                                                                                                                                                           <  2:280150/251‑1 (MQ=255)                                                                       cGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATATACATg                                                                                                                                                                           <  1:434071/251‑1 (MQ=255)                                                                                     gTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGc                                                                                                                                                             <  1:246369/251‑1 (MQ=255)                                                                                         aTTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCtt                                                                                                                                                         <  1:561890/251‑1 (MQ=255)                                                                                                              ccGACACAGGACTCA‑TGTGATAAATAAACAGATATTTTTGTGACGATGTTTAAGAGAATGTCGTGTGACTGAAGCTTTCCGGTGTCAGGTTTCCTCTGAGGTCGG‑GAAAGATTGAGCCCCAGGAGATATGTCTATCTTCCCCGGGGCTGCCA‑CTCCAAACCCTAACAATTTGGATGGTAGTTCCTTCCTCGCATGGATGCAATATAATCATTCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCggtg                                                                                                                                     <  2:228890/250‑1 (MQ=255)                                                                                                                           cattGT‑ATAAATTATCAGCTATTGTGTTGATGAAGGGTAAGTTAACGGCGGGTACTGGTAGCTTCCCGTTTTCAGTTTTACTCTGATGT‑TGTGAAAGATGACGCCCCAGTGGATATTTCTTTTAGCCCTGGGGCTGCCA‑CTCCAAACCCGACCAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCGGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTg                                                                                                                        <  2:437669/247‑1 (MQ=255)                                                                                                                                       aaaatagttATTTTGTGGAGGAAGGGTAAGATAACGGCGGGTGCCTTAAGCTGTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTATCGGTGCTGGGATTTACGCtt                                                                                                            <  2:455168/243‑1 (MQ=255)                                                                                                                                                        gAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCt                                                                                           <  1:832385/251‑1 (MQ=255)                                                                                                                                                                    gATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTAc                                                                               <  1:214086/251‑1 (MQ=255)                                                                                                                                                                        aCGGTGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCATCCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTg                                                                           <  1:462925/251‑1 (MQ=255)                                                                                                                                                                           gcggGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGGCTG‑GACAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGGGCTGTGTTTAACGGGGCTGGGATTTACGCTTCTGGTCGGAGAATCGCTGTGTGAGTTTACGGTGa                                                                          >  2:55283/1‑249 (MQ=255)                                                                                                                                                                                 gCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGt                                                                  <  1:9081/251‑1 (MQ=255)                                                                                                                                                                                                      ggTTTTCTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGAGGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGtt                                             <  2:784500/251‑1 (MQ=255)                                                                                                                                                                                                          tACTCGGAGGTCTG‑GAAAGATGAAGCCCCAGGAGAGATTTCTATCAACCTTGGGGTTGCCA‑CTCCAAACCCGAACAAGTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTtctc                                          <  2:649297/250‑1 (MQ=255)                                                                                                                                                                                                              ctGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCtt                                      >  1:145493/1‑250 (MQ=255)                                                                                                                                                                                                                gAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTACCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTa                                     <  1:471310/249‑1 (MQ=255)                                                                                                                                                                                                                          aaaGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCgaaga                          <  1:611574/251‑1 (MQ=255)                                                                                                                                                                                                                                    ccccAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGtt                <  1:178931/251‑1 (MQ=255)                                                                                                                                                                                                                                     caactttttggggtcagtacaCCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTtg               >  1:367610/21‑251 (MQ=255)                                                                                                                                                                                                                                      ccAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTtgt              >  1:308001/1‑251 (MQ=255)                                                                                                                                                                                                                                           agaTATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCggg         <  1:809130/251‑1 (MQ=255)                                                                                                                                                                                                                                             atatTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCgggg        >  1:198024/1‑250 (MQ=255)                                                                                                                                                                                                                                                     atcatcCCTGGTGCTGCCAACTC‑AAACCCGAACAAGTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATTCCCTTGCGGCATTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCTCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAATAAGTAGCCGTTGTGCGGGGAGTAAt  <  2:28398/248‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    CAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGT‑ATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTG‑GAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCA‑CTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAAT  >  NC_000913/607518‑608007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.