| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,869,637 | 0 | C | A | 94.4% | 90.8 / ‑6.4 | 36 | L87L (CTC→CTA) | cbrA | colicin M resistance protein |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (19/15); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
GTGGCGATTATTGGCCTCGGCCCGGCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTCACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTACCGCCCGCTATCTGGTCGGTGCCGATGGCGCAAACTCGATGGTGCGGCGACATCTCTACCCGGATCAT > NC_000913/3869392‑3869883 | gTGGCGATTATTGGCCTCGGCCCGGCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGGGCTGGATAACAAGCACCAGTGTGGTACTGAAGGTTTAAGCAAACCCTGCGGCGGTCTGCTGGCACCGGGCGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGCTGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCACCGCATCGCTAAcgcg > 1:173950/1‑251 (MQ=255) tGGCGATTATTGGCCTCGGCCCGGCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGCTGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGGCGACGTCGCCGCATCGCTAACGCGt > 1:190651/1‑251 (MQ=255) ggCGATTATTGGCCTCGGCCCGGCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGGCGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGCTGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGCAGTCGCCGCATCGCTAACGCGt > 2:41028/1‑250 (MQ=255) cGGCCCGGCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGc < 1:143430/250‑1 (MQ=255) ggCCCGGCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCta < 1:35951/251‑1 (MQ=255) ggCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATc > 1:342522/1‑250 (MQ=255) cAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAat < 1:371833/251‑1 (MQ=255) ggTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGc < 2:364563/250‑1 (MQ=255) cGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATGCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCttt < 2:258612/251‑1 (MQ=255) aaaGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGAACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGAAGC‑TTCCTGTCGAAGTGATCGCTAATCCGCAGATTTTCAGCGGCAAAACCGTCGGCGGCGCCGCATCGCTAAAGCGAAAATACCAGCGAAGCAATAGCAATAATAATCGCAATGCTTTCg > 2:109914/1‑251 (MQ=255) aGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTACAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCCGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGGTGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATTTTAATCGCCATGCTTTAGACTTGAGGATGAAATCGCTg > 1:320837/1‑251 (MQ=255) ggATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCGGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATc < 2:109820/250‑1 (MQ=255) cgcTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTGTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTCACGCGTAACTACCAGCGAAGCTATATCAATATAAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGcc < 1:142654/251‑1 (MQ=255) gcTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGcc > 1:130435/1‑250 (MQ=255) aCTGAAGGTTTCAGCAAACCCTGCTGCGGTCTGCTGGCACCGGCCGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCt > 1:109425/1‑251 (MQ=255) ggTTTCAGCAAACGCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCTATCTATTATTCGCGATGGGCTGAACC‑TTCCTGTCGATGAGCTCGCTAATCCGCAGATTTTCAGCGTCCAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGCATTTTGGATGAAATCGCTGATCCCCGCCAGCGCTGAGGTTTATCCCGACAGCCTGTGCCg > 2:179457/1‑251 (MQ=255) tgctgGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAGCCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGCTaa > 2:250740/1‑250 (MQ=255) gggcccggggcgcgGAGCGATTTTTTATTCGCGGTGGGCTG‑CGCCTTCCGGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAACCCGTCGACGTCGCCGCATCTCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGCCTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATg < 2:4002/240‑1 (MQ=255) cGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATTTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGATTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTc < 1:92745/251‑1 (MQ=255) ggaGCGATCTTGTATTCGGGAGGGGCTGACGC‑TTCCGGTCGATGGGTTCGCTAATCCGAAGATTTTCAGCGCCAAAACCGTCGGCGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATAGCAATATGAAGCGCCATGTTTTCGACTTGTGGATGAAATCGCGGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGAGGATAAATGGCATGTCATTTTTc < 2:186735/249‑1 (MQ=255) cAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGTTTTTCAGCGTCAAAACCGTCGAAGTCGACGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATACTTTCGACTTGTGGATGAAATCGCTGCTACCCGCCAGAGTTGAGGTTTATCACGACAGCCTGTGCCGCAAGCTCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCg > 2:32479/1‑251 (MQ=255) cAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCACAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGCTCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTct > 2:384756/1‑250 (MQ=255) cGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCACTATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCCCGACa > 2:361836/1‑196 (MQ=255) cGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACa < 1:361836/196‑1 (MQ=255) aTCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGc > 2:51713/1‑249 (MQ=255) aTGGGCTGACGC‑TTCCTGTCTATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTGCGACTTTTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTTCCGAAAAATCTg < 2:185977/199‑1 (MQ=255) aTGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCACAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTTCCGAAAAATCTg > 1:185977/1‑199 (MQ=255) tGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTCACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCAAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGCCGGCTGGGAGCAACatgtt > 1:403622/1‑248 (MQ=255) ctgccgcatCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCCAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATCTCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCTTTGAGGTTTATCACGACAGCCTGTGCCGACAAATCTGGCGTGCGGATGATAAATGGCATGTCATTTTTCGGGCAGACGGCTGGGAGCAACctat > 2:387338/9‑251 (MQ=255) gC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTAccg > 1:51366/1‑251 (MQ=255) cccggcggattggATCGCGATTCCGCAGTTTTCCAGCGACAAAACGTTCGACGGCCCCGCCCCGTTAACGCGTAACTACCAGCGAAGCTATATAAATATTAACCGCCATGCTTTCGATTTGGGGATGAACTCCCTGACCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTAccgcc < 2:342522/238‑1 (MQ=255) aTGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAGCCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTACCGCCCGCTATCTg < 1:250740/251‑1 (MQ=255) aaTCCGCAAATTGTCCGCGTCAAAACCGTCGCCGTCGCCGCATCGCTACCGCGTAACTACCAGCGAATCTATATCAATATTAACCGCCATGCTTGCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTACCGCCCGCTATCTGGTCGGTGcc < 2:130435/249‑1 (MQ=255) cGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTACCGCCCGCTATCTGGTCGGTGCCGATGgc < 1:384756/251‑1 (MQ=255) cAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTACCGCCCGCTATCTGGTCGGTGCCGATGgcgc > 1:319984/1‑251 (MQ=255) cGCTAACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCAATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGAGGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTACCGCCCGCTATCTGGTCGGTGCAGTTGGCGCAAACTCGAAGGTGAGGCGACATCTCTACCCGGgtcat > 2:351474/1‑251 (MQ=255) | GTGGCGATTATTGGCCTCGGCCCGGCAGGATCGGCGTTGGCACGAAAGTTAGCAGGCAAAATGCAGGTGATCGCGCTGGATAAAAAGCACCAGTGTGGTACTGAAGGTTTCAGCAAACCCTGCGGCGGTCTGCTGGCACCGGACGCGCAGCGATCTTTTATTCGCGATGGGCTGACGC‑TTCCTGTCGATGTGATCGCTAATCCGCAGATTTTCAGCGTCAAAACCGTCGACGTCGCCGCATCGCTCACGCGTAACTACCAGCGAAGCTATATCAATATTAATCGCCATGCTTTCGACTTGTGGATGAAATCGCTGATCCCCGCCAGCGTTGAGGTTTATCACGACAGCCTGTGCCGAAAAATCTGGCGTGAGGATGATAAATGGCATGTCATTTTTCGTGCAGACGGCTGGGAGCAACATATTACCGCCCGCTATCTGGTCGGTGCCGATGGCGCAAACTCGATGGTGCGGCGACATCTCTACCCGGATCAT > NC_000913/3869392‑3869883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |