| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,301,769 | C→T | A196A (GCC→GCT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,301,769 | 0 | C | T | 96.9% | 91.5 / NA | 32 | A196A (GCC→GCT) | oppA | oligopeptide ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (17/14); minor base A (0/1); total (17/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCACAAGACTTTGTGTATAGCTGGCAACGTTCTGTTGATCCGAACACTGCTTCTCCGTATGCCAGTTATCTGCAATATGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCCGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCG > NC_000913/1301525‑1302010 | caGCACAAGACTTTGTGTATAGCTGGCAACGTTCTGTTGATCCGAACACTGCTTCTCCGTATGCCAGTTATCTGCAATATGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATc < 2:204554/251‑1 (MQ=255) aaGACTTTGTGTATAGCTGGCAACGTTCTGTTGATCCGAACACTGCTTCTCCGTATGCCAGTTATCTGCAATATGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGaa > 1:322560/1‑250 (MQ=255) cTGGCAACGTTCTGTTGATCCGAACACTGCTTCTCCGTATGCCAGTTATCTGCAATATGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATgg > 2:315214/1‑250 (MQ=255) gAACACTGCTTCTCCGTATGCCAGTTATCTGCAATATGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGTAAAAAACCGATTACCGATCTCGGCGTGAAAACTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGCTCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCggc > 1:305143/1‑248 (MQ=255) gAACACTGATTCTCCGTATGCCAGTTAACTGCAATATGGGCATATCGCCGGTTTTGATGTAATTCTTGAAGGGAAAAAAACGATTACCCATCTCGGCGTGAACGCTATTGATGATCACTCATTAGAAGTCTCCTTAAGTGATCCCGTTCCGTACTTCTATAAATTACTTGTTCATCCATCAACGTCACCGGTGCCAAAAGCTTCTATCGAGAAATTCGGCGAACAATGGCCCCAGCCTGGTAatataggga < 2:305143/251‑6 (MQ=255) aaatGGGCATATCGCCGGTATTGATGAAATTCTTGAATGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTAATGATGATCAAACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATGACTTGGTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCg < 2:364104/249‑1 (MQ=255) atGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTa < 1:34632/251‑1 (MQ=255) ggCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTa < 2:22513/204‑1 (MQ=255) ggCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTa > 1:22513/1‑204 (MQ=255) aTTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCt < 2:322560/251‑1 (MQ=255) gaAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATGAGAAGTCTCCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCCCCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGAGTGGGTCGTAAACGAACGAATCGTTCTTGAAc < 2:212859/250‑1 (MQ=255) tGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCg < 1:226524/250‑1 (MQ=255) aaaaCCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGATAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCTTCACCAACCGTGCCTCTCCCTTCAAAGATTTGGTCGTAAACGAACCACTCGTCCTTGCACGCAGCCCGACCTAATgg > 2:29045/1‑250 (MQ=255) ccGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCa < 1:193742/175‑1 (MQ=255) ccGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCa > 2:193742/1‑175 (MQ=255) gATTACCGATCTCGGCGTGAGAGCTATTGCTTATCACACATTAGAAGTCACCTTTAGTGAAACCGTTCCGTACTTCTCTAAATTACTTGTTCAACCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAACAATGGACCCAGCCTGGTAATCTCGTCACCAACGGTGCCTATACCTTAAAAATTTGGGTCGTAAACGAACGAATCGTTCTTGAACgacgcccgccatcatggaaacacg > 2:127961/1‑228 (MQ=255) cGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCTCCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGtta < 1:50623/251‑1 (MQ=255) gTGAAAGCTATTGAAGATAACAAATTAGAAGTCACCTTAAGCGAACCCGATCCGTACTTCCATAAATTACTTGTTCACCCAGCAACTTCACCGGTGCCAAAATCTGCTATCGAGCAATTCGGCGAAAATTGGACCCACCCTGGCAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACAAATCGTTCTTGAAAGCAGCCCGACCTATTGGAAAAACGCGAAAACCGtcatta > 2:258348/1‑250 (MQ=255) gCTATTGATGATCACACATTAGAGGTCACCTTAAGTGAACCCGTTACGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATAGAGAAATTCGGCGAAAAATGGACCAAGCCTGGAAATATCGTCCCCACAGGTGCCTATACCTTAAAAGATTGGGTCGTACACGAACGAATCGTTCTTGAACGCAGCCCGCACTACTGGAACAACGCAAAAACCGTTATTAACCatgt > 2:150955/1‑248 (MQ=255) gAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAACACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTc > 2:141200/1‑251 (MQ=255) aCCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGcc < 2:379520/121‑1 (MQ=255) aCCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGcc > 1:379520/1‑121 (MQ=255) tCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCt > 2:343029/1‑251 (MQ=255) acGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTAGCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCt < 1:203214/249‑1 (MQ=255) aCTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGGAGTGGTGAAATCg > 2:29757/1‑251 (MQ=255) cACCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAAATCGCCATGAc > 2:402310/1‑251 (MQ=255) aCCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTAttt < 2:7386/190‑1 (MQ=255) aCCCATCAACTTCACCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTAttt > 1:7386/1‑190 (MQ=255) cAACTTCACCGGTGCCAAAAGCAGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATAACGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAAATCGACATGACGAATaa < 2:209550/250‑1 (MQ=255) aCCGGTGCCAAAAGCTGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGTAATCGACATGACGAATAACAGCATGc > 1:228856/1‑251 (MQ=255) aCCGGAGCCAAAAGCTGCTATCGAGAAATTCGGCGACAACTGGACCCAGCCTGGTAATATAGTCACCAACGGTGCCTATAACTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTAATGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGACTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGATGAAATCGAACTGACGAATAACAGCATGc > 2:363631/1‑251 (MQ=255) gCCAAAAGCTGCTATCTAGAAATTCTGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACTAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAGCCGTTATTAACCAGGTACCCTATGTGCCTATTGCTTCTGAAGTTACCTATGTCAACCGCTACCGCAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCg < 2:388871/251‑1 (MQ=255) | CAGCACAAGACTTTGTGTATAGCTGGCAACGTTCTGTTGATCCGAACACTGCTTCTCCGTATGCCAGTTATCTGCAATATGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAACCGATTACCGATCTCGGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCACCCATCAACTTCACCGGTGCCAAAAGCCGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCG > NC_000913/1301525‑1302010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |