| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,434,657 | C→T | G637R (GGG→AGG) | cpdB ← | 2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase/3'‑nucleotidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,434,657 | 0 | C | T | 96.7% | 80.8 / ‑6.7 | 30 | G637R (GGG→AGG) | cpdB | 2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase/3'‑nucleotidase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (19/10); total (20/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGC > NC_000913/4434413‑4434882 | gAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGatat > 1:321933/1‑250 (MQ=255) aCTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGGGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGGGCTTATCTGGTCTACGGGGCATGGCTTGGAGGGGGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGACAAAGACGTGTTTTACTTACTAAAATCCCCCTGCTAAATCGCCAAACTGCTATCATCGGTAGCGACtt > 2:329997/1‑251 (MQ=255) cGGACTGGATTGAGTTGCATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATATGGTCTACGGTGCATGGCATGTAGGGCGGATAAGAAGCGCCAGCATCGCATCCGCCCATAAATGCCGGATGCGGGTGATGCTTTATAGGCCGAAAAAGAAGGGTTTTACTTACTCAAATCCACATGATAAATCGCAAACCTTATATCATCGGTCGAGACTTTATTc > 1:417019/1‑251 (MQ=255) ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGccc < 1:91333/241‑1 (MQ=255) ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATAATGccc > 2:91333/1‑241 (MQ=255) cGAGGAGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGCGCTTATCTGGTCTACGGGGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCCTCCGCCAATAAATGCCGGGTGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCCCCTGTTAAATCGCAACCCTGATATCATCGGTCGCGACTTTAGTCATAGGATACTGCCCTTTCTCtttt > 2:278101/1‑249 (MQ=255) gtTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACg > 1:116886/1‑251 (MQ=255) tGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGCTAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGcc > 2:117012/1‑250 (MQ=255) gTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTTACggg > 2:340352/1‑250 (MQ=255) cGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGCAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACgg > 2:251832/1‑251 (MQ=255) cTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGCTACGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTTCGGCTTTATCTGACGGAGCGGTTTCGACACGGATATCCAGTTTCt > 2:172802/1‑251 (MQ=255) gATAAGAGGGGCCAGCATCGCTGCCGCTAATAAAGGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACGTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGGTAAACGCCAgttgtt < 1:388107/251‑1 (MQ=255) tcgcatcCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCAACGGTCGCGACTTTATTCATCGGCTACTGCCCTTTATCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAGCGGATATCCAGTTACTTATCGCCAGCTCTCGGTGCTAAACGCCAGTTGTTATCttcacccggagga > 2:119423/1‑238 (MQ=255) cgcatcCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGCTATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGGGAAt > 1:396669/1‑251 (MQ=255) atcCGCCAATCAATGCAGGATGAGGTTGCTGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAACTCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGAGATCCCGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCACCGGGGGAATTTc > 2:389046/1‑251 (MQ=255) aaaTGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACg < 1:340352/250‑1 (MQ=255) ggCCGGATGGGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAAGCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAACCGGATATCCAGTTTCTTATCGCCAGCTATCGGTGTTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTc < 2:222589/250‑1 (MQ=255) ggctttATAGGCCGAAAAAGAAGGGTTTTACTTACTAACATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTAATCGGATACTGCCCTTTCTCTTTAATAACCGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCACCTATAGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCGCCGCACGTTTCGCCtcatacgcaaacc > 2:288048/4‑242 (MQ=255) gatTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAAc < 2:343062/117‑1 (MQ=255) gatTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAAc > 1:343062/1‑117 (MQ=255) ataGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTg < 1:292578/251‑1 (MQ=255) ataGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTg < 1:218981/251‑1 (MQ=255) ggCCGAAAAAGAAGTGTTTTACTTACTCAAATCCGCCTGATAAATCGCAAACCTGATATCATCGGGCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATAGCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCa < 2:305430/251‑1 (MQ=255) ggCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGTGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGcc > 1:176346/1‑250 (MQ=255) ggCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCACCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGGTGcc > 2:192102/1‑250 (MQ=255) gaagTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCg > 1:78155/1‑251 (MQ=255) aagTGTTTTACTTCCTCAAAACCACCTGATAAATCGCCACCCTGATATCATCGGTCGCGACTTTATTCATCGGATACGGCCCGTTCTCTTTAATAACCGCCGCGGCTTTATCTGACGGAGAGGTGTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAACCGCCAGTTGTTAGCTGCCGCCGGGTGAATTTCCCCCGCCCGTTTCGTCTCCCCAGCAAGCCTCGATGCCAGCCCCGAGCgg < 2:64718/251‑1 (MQ=255) gtgtTTTACTTATTCAAAGCCCCCTGAATAATCGCAAACCTTATATCATCGGTCGCCACTTCTTTCACCGGATCCTGCCTTTTCTCTTTAATAAACGCTGCGGCTTTATCGGACGGAGAGGTGTCGAAACGGATATCCAGTTACTTATCGGCAGCTATCTGTGCTAAACGCCAGTGGTTATCTGCCGCCGGGTGAAGTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGTACCGAGCTGtt < 2:371994/251‑1 (MQ=255) tCAAATCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGa > 1:333292/1‑250 (MQ=255) aaTCCACCTGATAAATCGCAAACCTGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGc > 1:273404/1‑250 (MQ=255) | GAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGC > NC_000913/4434413‑4434882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |