| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,430,071 | G→A | V70M (GTG→ATG) | cycA → | D‑serine/alanine/glycine/:H(+)symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,430,071 | 0 | G | A | 96.8% | 89.7 / NA | 32 | V70M (GTG→ATG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (15/15); minor base C (1/0); total (17/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
ACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCGTGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGACTGGGTCGCCTCGCTGGCGGTGATAGTGCTGCTGCTGACG > NC_000913/4429848‑4430307 | aCAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATtgctgc < 1:230584/251‑1 (MQ=255) gTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGATCCCTTTGG‑AAGGGGGTGTTTTTTGGGACTGGCCAAAAC‑AGTAGACTTTCCCGGCCGTCGGTCATTTTCGTTTTTATTA‑GCAATGATTTTATGCTCTTTTTCATGAT‑GCTGGCAATGGGGGGATTGCTGCTTTCGAATCTGGGATAcc > 1:287362/1‑249 (MQ=255) gTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCGCACAAACCGACATATTCAGCGTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAAGCTGGAATACaa < 2:263887/251‑1 (MQ=255) cGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTGGATCGGGGGTTTTTATGGGGTTTGGC‑ACAACGAATTGTCTTGCCGGGACGTCGGCCCTTTTTGGTTATATGACTATTTGGGTTT‑TGCTCTTTTTTATTTT‑GCGGGGCATGGGGGGATTGTTGCTTTCGTGTCTGGAAAACAAATCTTTTTGTTACtttg > 1:89946/1‑249 (MQ=255) ccGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTcc < 1:180777/251‑1 (MQ=255) gatgatCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTTGTACGGGGTTGTTTATGTGGGCTGGC‑CAAACGGTTAAGATTGCCGGGCCGTCGATCCTTTTTGGTTATATGA‑TCATTGGGTTTCTGCTCTTTTTCATTAT‑GCGCGGTATGGGGGGATTTATGCTTTCGAATCTGGGATACAAATCTTTTAGttgtctcgtttcccc > 1:72279/1‑237 (MQ=255) aGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCCTTGGCGG‑TCACCCTGGGGCGGGGGTGGTTATGGGGGCCGGC‑AACACGATTAACCCTGCCCGGGCGTCGAGCCATTTAGATTCTTTGA‑TTATTGGGTTTATGCTCTTTTTCCTGATTGGGGCCCAGGGGGTAATT‑CTGTTTTCGCATCTTGAATACAAATATTTTATTGTCTTCGCGTCCGtttttttc > 1:34560/1‑247 (MQ=255) gCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCCTTGGTAAGGGGGTGTTTTTGGGGGCTGGC‑AAAAAGATTAGCCTTGCCGGGGCGTCGCTCCTTTTCGTTTTTATGA‑TCCTTTGTTTTTTGCTCTTTTTTTTGAT‑GCGGGCAATGGGGGGATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTTCGCTTTTCTCGGGCCGGGGGCAgggaatt > 1:285416/1‑246 (MQ=255) aCGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTc < 1:38868/250‑1 (MQ=255) acaAACCGACATATTCAGCTTATTGCCATTGGCTG‑TTCCATTTTTACGGGGGTGTTTTTGGGGGCTGGG‑AAAACAAATTGGCTTGCCGGGGCGGCGATTATTTTGGGTTATTTGG‑TCCTTGGTTTTTTTCTCTTTTTTATGAT‑GCGGGCAATGGGGGGATTGTTGCGTTCGAAACTGGAATAAAAATCTTTTAGTGACATCGCTTCCGTTTTAATCTGGCCGgggggcgggtattttcccgggttggattt > 1:93092/1‑226 (MQ=255) aaaCCGACATATTCAGCTTATGGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTAcg < 2:9452/251‑2 (MQ=255) aaaCCGACATATTCAGCGTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACt < 2:89946/251‑1 (MQ=255) ccGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGTCAATGGGGGAATTgctgctgtc < 2:196666/165‑4 (MQ=255) cATATTCAGCTTATTGCCATTGGCGG‑TGCCCTTGGGACGGGGTTGTTTATGGGGGCTGGC‑AAAAAGATTAGGCTTTCCGGGCCGGCGATCATTTTCGTTTATATGG‑ACATTGGTTTTTTGCTCTTTTTCATTAT‑TCGGGCCATGGGGGGATTGGTGGTTTCGAATCTGGAAAACAAATATTTTTGTGACTTTCCTTTCGATTTATTCCGGCCGTGGGGAGGAAAttttacaggcctggcgtactgggtctt > 1:133585/1‑227 (MQ=255) cAGCTTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACt < 1:417182/184‑1 (MQ=255) ccATTGGCGG‑TGCCATTGGGACGGGGGTGTTTATGGGGGCTGGC‑AAAACGATTAGCCTTGCCGGGCCGGCGATCATTTTCGTTTATATGG‑TCATTGGGTTTTTGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCCCTTCCGATTTTATCTGGCCGTGGGCAGGATATTTTACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCggg > 1:348989/1‑250 (MQ=255) gg‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTc < 1:161336/173‑1 (MQ=255) gg‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTc > 2:161336/1‑173 (MQ=255) cATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGCTCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTATTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGACTCTGGACTACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACgtgg > 1:50314/1‑251 (MQ=255) ccTTTCCGGGCCGTCGATCATTTTCGTTGATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGAtctct < 2:21387/251‑1 (MQ=255) gTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGATCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGTACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCGGACGTGGTGTCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGACTggggcg > 2:31963/1‑248 (MQ=255) tCGATCATTTTAGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCAACGGCTGGACTTACTGGATCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGGTCTCTCCGACTGGGTCGc > 1:112580/1‑251 (MQ=255) tttCGTTTATATGA‑TCATTGGTGTTATGCTCTTTTTCAGGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGACTGGGTCGCCTCGCTg < 2:348989/250‑1 (MQ=255) tttATATGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGCCTGGGTCGCCTCGCTGGCGGTg > 2:172578/1‑251 (MQ=255) atatGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTgg < 2:391760/209‑1 (MQ=255) atatGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTgg > 1:391760/1‑209 (MQ=255) atGA‑TCACTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGAATGGGTCGCCTCGCTGGCGGTGATAgg > 1:45832/1‑250 (MQ=255) tGA‑TCATTGGTTTTATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGCTTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTTCCCCACTGGGTCGCCTCGCTGGCggggggagtg > 2:74273/1‑243 (MQ=255) ttATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGACTGGGTCGCCTCGCTGGCGGTGATAGTGCTGCTGCTGAc < 1:332715/250‑1 (MQ=255) tATGCTCTTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCGTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGACTGGGTCGCCTCGCTGGCGGTGATAGTGCTGCTGCTGACg < 2:34560/250‑1 (MQ=255) tctTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTAt > 1:276616/1‑148 (MQ=255) tctTTTTCATGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTAt < 2:276616/148‑1 (MQ=255) | ACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGG‑TGCCATTGGTACGGGGTTGTTTATGGGGTCTGGC‑AAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGA‑TCATTGGTTTTATGCTCTTTTTCGTGAT‑GCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCTCCGACTGGGTCGCCTCGCTGGCGGTGATAGTGCTGCTGCTGACG > NC_000913/4429848‑4430307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |