| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,284,410 | G→A | Q165* (CAG→TAG) | actP ← | acetate/glycolate:cation symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,284,410 | 0 | G | A | 97.1% | 100.1 / NA | 36 | Q165* (CAG→TAG) | actP | acetate/glycolate:cation symporter |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base A (18/16); minor base C (1/0); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTGTACCGCCATCGCTTCACTGAACAGATTGTTGAAGCTAAAGCCGACGTGTTTCATCACCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTGGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCCAGCCCACCAGGAAGCCCAGCGAGTAAATTAAGCCGTCATAGCCGGAGGTAAACACCAGCGCGGAGATCCCCAAGAATGAGG > NC_000913/4284167‑4284643 | ggcgtACCGCCATCGCTTCACTGAACAGATTGTTGAAGCTAAAGCCGACGTGTTTCATCACCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCTCCAGCATGCCGCCGAACAGGACGTCAATCATCATCAGCACGCCGACCAGCACCACCGCAATGAGATAGTTAAGGCCAAACAACAACTCGATCAGATTCCCTGCTCACACCATCTCGGCGAt > 2:72737/4‑250 (MQ=255) aCCGCCATCGCTTCACTGCACAGATTGTTGAAGCTAAAGCCGACGTGTTTCATCACCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGCTAAGGt > 2:270410/1‑250 (MQ=255) ttCACTGAACAGATTGTTGAAGCTAAAGCCGACGTGTTTCATCACCATAAAGGCCATACAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGAACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTGGGCGATAAGGTAAAGCGccaccc > 1:41636/1‑250 (MQ=255) gAACAGATTGATGAAGCTAAAGCCGACGTGTTTCATCACCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGccaccaccac < 1:65204/249‑1 (MQ=255) tgttgAAGCTAAAGCCGACGGGTCTCATCACCATAAAGGCCATAAATCTGGCACCGAACAGCAACAGCACGGCTTTGATAATGTGCACCCAGGTCGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCTCCACCACCACCAGAGAAcc < 2:212951/250‑1 (MQ=255) aaaGCCGACGTGTTCCATCACCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGaa < 1:208835/250‑1 (MQ=255) gACGTGTTTCATCACCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATAc > 1:136289/1‑251 (MQ=255) aCCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTg > 1:70149/1‑251 (MQ=255) aaaGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGTCCGAAAGAATACGAAGCGGCCCTTGTTTCa < 1:320740/251‑1 (MQ=255) aaGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTc > 1:327927/1‑249 (MQ=255) ccATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATCCGAATCGGCCCTTGTTTCAGACgg > 2:156231/1‑251 (MQ=255) aaaGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTa > 1:139360/1‑249 (MQ=255) aCCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACAt < 1:26290/251‑1 (MQ=255) aacagcaacagcACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAgc > 1:324336/1‑174 (MQ=255) aacagcaacagcACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAgc < 2:324336/174‑1 (MQ=255) caacagcaCGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTACGGCCAAACAGCCGCTCGCTCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGCCGGTACGAGGCCACCCCGGCAAAgg > 2:66582/1‑251 (MQ=255) aacagcaCGGCTTTGATAATTTGCACCCCGGTTGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAACAGCTTGATCAGTTTACCTGCGCCCACCAGCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATTGGCAAAGgt < 2:113304/251‑1 (MQ=255) acagcaCGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCCCCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGCTAAGGTAAAGCGCCACCACCACCAgaga > 2:347192/1‑184 (MQ=255) acagcaCGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAgaga < 1:347192/184‑1 (MQ=255) aaTTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTa < 1:59831/250‑1 (MQ=255) aaTTCGCACCCAGGTGTCCGCCAGCATGCCGCCGAACAGGACGTACATCAGCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTAc < 2:383929/251‑1 (MQ=255) gACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCCAGc > 1:179021/1‑251 (MQ=255) atcatcaGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCCAGCCCACCAGGa > 1:14935/1‑250 (MQ=255) cAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGccacca > 2:109106/1‑92 (MQ=255) cAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGccacca < 1:109106/92‑1 (MQ=255) ccaccGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAAGCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCCAGCCCACCAGGAAGCCCAGCGAGTAAATTAAGCCg < 2:70149/251‑1 (MQ=255) caccGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCCAGCCCACCAGGAAGCCCAGCGAGTAAATTAAGCCGt > 1:288421/1‑251 (MQ=255) ccGCAATGTGATAGGTAAGGCCAAACAGCAGCTCGATCAGGTTACCTGCGCCCACCAGCTAGGCGAGAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCGTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCAAGCCCACCAGGAAGCCCAGCGAGTAAATTAAGCCGTcc < 2:336276/251‑2 (MQ=255) gCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCGCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCCAGCCCACCAGGAAGCCCAGCGAGTAAATTAAGCCGTCATa < 1:274745/251‑1 (MQ=255) aTGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCa > 2:328516/1‑175 (MQ=255) aTGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCa < 1:328516/175‑1 (MQ=255) tgATAGTTACGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTAGGCGCTAAGGTAAAGCGCCCCCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGCAACAAAATGCTCGGACAGCCCACCAGGAAGCCCAGCGAGTCACTTAAGCCGTCATAGCCgg > 1:280043/1‑250 (MQ=255) agcagcTCGATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGATCGGCAATCAGGAACAAAATGATCGGCCAGCCCACCAGGAAGCCCAGCGAGAAAATTAAGCCGTCATAGCCGGAGGTAAACACCAgcgccg > 1:3759/1‑248 (MQ=255) ccgaacAGTTTCCCTGCGCCCACCATCTAGGCGATAAGGTAAAGGGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGTCCCTTGTGTCAGACGGTAAGAGGCCACATCGTCAATGGTGTAGCGCCCCAGGCTACTCAGACGTTCGGCAATCAGGAACAAAATGATCGGGCTGCCCACCAGGAAGCCCAGTGAGTAAATTAAGCCGGCAGAGCCGGAGGTAAACACCAGGGCGTAGATccc < 2:379392/246‑1 (MQ=255) gATCAGTTTACCTGCGCCCACCATCTAGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGACCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCCAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCCATCAGGAACAACATGCTCGGCCAGCCCACCAGGAAGCCCCGCGCGTCAATTAAGCCGTCATAGCCGGAGGTAAACACCCGCGCGGCGATcccc > 2:144024/1‑250 (MQ=255) aCCTGCGCCCCCCATCTAGGCGCTAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAACGAATACGAATCGGCCCTTGTTTCAGACGGCAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTCCGCCGACGTTCGGCCATCAGGAACAAAATGATCGGCCAGCCCCCCGGGAGGCCCAGCGAGGCAATTAAGCCGTCATAGCCGGAGGCAAAAACCAGCGCGGAGATCCCCAAGCATGAgg > 2:36500/1‑251 (MQ=255) | GGTGTACCGCCATCGCTTCACTGAACAGATTGTTGAAGCTAAAGCCGACGTGTTTCATCACCATAAAGGCCATAAAGCTGGCACCGAACAGCAACAGCACGGCTTTGATAATTTGCACCCAGGTGGTCGCCAGCATGCCGCCGAACAGGACGTACATCATCATCAGCACGCCGACCAGCACCACCGCAATGTGATAGTTAAGGCCAAACAGCAGCTCGATCAGTTTACCTGCGCCCACCATCTGGGCGATAAGGTAAAGCGCCACCACCACCAGAGAACCACAGGCCGAAAGAATACGAATCGGCCCTTGTTTCAGACGGTAAGAGGCCACATCGGCAAAGGTGTAGCGCCCCAGGTTACGCAGACGTTCGGCAATCAGGAACAAAATGATCGGCCAGCCCACCAGGAAGCCCAGCGAGTAAATTAAGCCGTCATAGCCGGAGGTAAACACCAGCGCGGAGATCCCCAAGAATGAGG > NC_000913/4284167‑4284643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |