| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,113,851 | 0 | G | A | 94.1% | 93.8 / ‑0.7 | 35 | H208Y (CAT→TAT) | fpr | flavodoxin/ferredoxin‑NADP(+) reductase |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (22/10); total (23/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.46e-01 | |||||||||||
TCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTG > NC_000913/4113628‑4114097 | tcaCTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGcc > 1:379749/1‑251 (MQ=255) ccATTGATCCACCGTGTCATGCCGGCAGATCGCGGGATGACCAATAAGATGAGTGCTGATTTGGGCGTCGTGCCGTTTAGCCATAAGTAACCGCTTACCAGTAATGCTCCACTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGGCTCGTTCAGCAACTGTTGTGTATCGCGCACCATCTGTTGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCaagc < 2:189765/250‑3 (MQ=255) cGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACCGCATCACATAGCTGGTTTCTTTTTTCATCGGCAGGCCACTCGTGCTTTCCAGt > 2:181529/1‑251 (MQ=255) cGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGGGCTTTCCAGt > 1:103303/1‑251 (MQ=255) ccGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGccgggcc > 2:136888/1‑221 (MQ=255) ccGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCa < 1:136888/227‑1 (MQ=255) atCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCCCAGCATCACATAGATGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAATTCCCCACTTTCatttt > 2:266014/1‑247 (MQ=255) ggATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACCTAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTACCAGTTCCCCCCTTTCAATTAATGCCg > 2:284485/1‑251 (MQ=255) gCCGTTTATCGATAAGTACCCGCTTACCAGGAAGGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATTTTTCGTCATCTGCCGGGTCTCTTTCAGCAACGGTTTTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCa < 1:383460/172‑1 (MQ=255) gCCGTTTATAGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGACAGGTCGGCGACGTAAATGTTTCGTCCTCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCCCCATCTGCGGATTGCCGCACAGCCTCACCTAGCTGGTTTCTTTATTCATCGGCa > 2:383460/1‑172 (MQ=255) ccGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGACGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTACAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCg > 1:153930/1‑250 (MQ=255) ttATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCACCCCTTTCAATTAATGCCGGTATCCGTCCGGTGCGCGACCCCGCTGCCGTTTCCCGACTg > 1:167906/1‑250 (MQ=255) cGATAAGTAACCGCTTACCAGTAAGGCGCCGCGGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCAGCTGCCGGGTCCCTTTCAGCAACTGTTGTGGATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGacca < 2:153930/250‑1 (MQ=255) tAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTg > 1:342745/1‑250 (MQ=255) aaCCGCTTACCAGTAATGCTCCGCTGTCATATGGCACGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCAGCTGCCGTTTACCGACTGACCACCGTCTGa > 1:345613/1‑250 (MQ=255) gCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCACTTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATgcg > 1:334815/1‑251 (MQ=255) ttACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATgcgc > 1:104155/1‑250 (MQ=255) aTGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCtt < 1:284485/251‑1 (MQ=255) cATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGttttt < 1:266014/251‑1 (MQ=255) ggCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCCTCGGCAGGCCAATCGCGCTTTCAAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGGGAGCGACCCCGCAGCCGTTTCCCGACTGGCCACCGTCTGAATGCGACGTTTTCCTTCATAGCGTTTTTCCAGt > 2:314776/1‑251 (MQ=255) gCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCGGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATcc > 2:180301/1‑250 (MQ=255) cGTAAATGTTTCGTCATCTGCCGGGACTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCAAATAGATGGTTTCTTTATTAATCGGCAGGCAAATCGAGATTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGGGAGCGACCCCGCGGCCGTTTCCCGACTGACCACCGCCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCAGAATCAgagg > 1:319639/1‑248 (MQ=255) gTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTACCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTCGCGTTTTTCCCGTTCCTGcctccatggc > 2:108396/1‑242 (MQ=255) aaTGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGCaa > 1:89337/1‑250 (MQ=255) gTTTCGTCATCTGCAGCGTTTCTTTCAGAATCTGTTGTGTAACGCGCACCATCTGTGGATTGCCGCACATCATCACATAGCTGGTTTCTTTATTCTTCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTTAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGCAAAt < 2:251697/249‑1 (MQ=255) gCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCCCACAGCCTCACATAGCTGGTTTCTTTATTCATCGGCCGGCCACTCGCGCTTTCCAGTTCCCCACTTTTAATTAATCCCGGTATCCGTCCGGTGAGCGACCCCGCAGCCGCTTCTCGTCGCTCCACCGTCCGAATGCGCGGCTTTCCTTCGGAGCCTTTTTTCCGTTCCTGCATCAGTGGCACACAGTTTAAGTcgccg > 2:111478/1‑248 (MQ=255) ccaggaaCTGTAGTGTGTCTCGTACTATCGGTGGATTGCCGGACAGCATCACATTGCTGGTTTCTTTATTCATCGGCAGGCCAATCTTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCTGTTTTCCTTCGTAGCGTTTTGTCAGATCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTgcg < 1:239799/246‑1 (MQ=255) aCTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTGTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGGGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGc < 2:342745/251‑1 (MQ=255) gttgtGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCGGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCa < 1:180301/249‑1 (MQ=255) gttgtGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCAc < 2:104155/250‑1 (MQ=255) tctCGCGCACCATCTGTGGATTGCCGCACAGCATCACATAGCTGGTTTCTTTATTCCTCGGCAGGCCAATCGTGCTTTCCCGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTACCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCTTTTTTCCAGTTCCTGAATCAGTGGCCAATAGCTTAAGTCGGCGGCATAACGTGCGGCGGGCACCAggccc > 2:79265/3‑248 (MQ=255) ttgGATTGCCGCACAGCATCACATAGCTGTTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCTCTTTCAATTAAGGCCTGTATCCGGCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGCAAATAGCTTAATTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAg < 2:382687/247‑1 (MQ=255) caGCAACACATAGCAGGCTTGTTTATTCATCGGCAGGCCAATCGATCTTTCCAGTTCCCCACTTTCACTTAATGCCGGTATCCGTCCAGTGAGCGACCCCGCTGCCGTTTCCCAACTGCCCACCGCCTGAACGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGAAAAAAGCTTAAACCGGCGGCATAACGTGCGGCGTGCACCCGGACCAAATTTTTGAAGCGGTATAAATCttacc > 2:233283/1‑248 (MQ=255) cacaTAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCTATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCCGTTCCTGCTTCAGTGGCAAATAGCTTAAGTCGGCGGCCTAACGTGCGGCGTGCACCAGGACCAGTTTTTTGAAGCGTTCTAAATCTTTACCTAGtt > 2:83265/1‑251 (MQ=255) acaTAGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAATTCCCAACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGAACCCGCTGCCGTCTACAGACTGACCACCGTCTGAATGCGCGGATTTCATTCGTAGCGTTTTTCCAGTTCCTTCCTCAGGGGGAAACAGCTTAAATCGGCGGCCTAACGTGCGGCGGAAACCAGGACGCGATTTTTGCAGCGATCTCATTCTTTACCtcattg > 2:99165/1‑246 (MQ=255) | TCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCAGTTCCCCACTTTCAATTAATGCCGGTATCCGTCCGGTGAGCGACCCCGCTGCCGTTTCCCGACTGACCACCGTCTGAATGCGCAGTTTTCCTTCGTAGCGTTTTTCCAGTTCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTG > NC_000913/4113628‑4114097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |