| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 339,935 | 0 | C | T | 95.0% | 43.3 / ‑6.0 | 20 | A56V (GCC→GTC) | yahH | putative uncharacterized protein YahH |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (4/15); total (5/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
TTTTGCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTAT‑CCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACA > NC_000913/339689‑340162 | ttttGCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCCAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAAGGGGCAAGAATCTTTAGGCCTGGTAATAGCAGCGCATCAGG‑CATTTGgcacc > 1:163281/1‑251 (MQ=21) gCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGGTGCGGCGTGAACGCCCTATCCCGCCCTCGAATGGCGCCAGAATCTGTAAGCCTGATTAGCGTAGCGCATCAAG‑GATTTGtcaccattt > 2:126641/1‑248 (MQ=18) cGAGAAAGCCATTCTTGGCTGGGGCGAACGTTACGGCGTCTGTCCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATTCGGCGTGAACGCCTTAGCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATgc < 1:388845/251‑1 (MQ=255) gagaAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCCTTGCCGGGTGCGGCGTGGACGCCTTTTTCCGCCCACGAAAGGCGCAAGAATCTTTAGGCCTGGTAAACGTCGCGCCACAGGGCTTTTGC‑ACCATTGCCGGATgcg > 2:87053/1‑251 (MQ=18) ggCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTa < 1:116989/250‑1 (MQ=255) cGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAAGCCTGGTAAGCGTAGCGCATAAGG‑CATTTGTCCCCATTTCCCGGTGCGGCGTGAACCCCTTATACCGGct > 1:310666/1‑249 (MQ=17) gacctgcagggtCATGCCGGGTGCGGCGGGTACGTCTACACCGGGCTACGAGTGGGTCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCGCCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAAGCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAGTGGCGCGAGaagt < 2:311132/240‑3 (MQ=11) gACCTACATGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAGTGGCGCGAGAAtt < 1:185644/251‑2 (MQ=255) ccTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGGACGCCTTAT‑CCGGCCTaagcgaggcgcggggattgt > 1:253670/1‑232 (MQ=14) aTGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGAGGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAGTGGCGCGAGAAT‑TGTAGGCCTGATAAGCGTAgc < 1:133914/251‑1 (MQ=9) gcggcgTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAGTGGCGCGAGAAT‑TGTAGGCCTGATAAGCGTAgcgc < 1:327644/251‑1 (MQ=9) cGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGAAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTAACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGCGGGGCGCGAGAAT‑TGGAGGCCTGATAAGGGGAGCGCATCAGGCaggcgtgcgttgggatta > 1:362022/1‑233 (MQ=11) ccGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGtt < 1:235286/251‑1 (MQ=255) ggCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGGTgg > 1:157721/1‑251 (MQ=255) aGAATCTGTAGGCCTGATAAGCGTAGCGCTTCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAC‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCAccc < 2:157721/251‑1 (MQ=14) gAATCTGGAGGCCGGATAAGCGTAGCTCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGGGAACGCCTTAT‑CCGGCTTACGAATGTCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCCGGCAGTTGTCACCATTGCCGGATGCGGCGTGAACGTCTTATCCGGCCTACTAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCTAATCAGGCAGTCTGGCGTTGGTCATAACCCCATCAcccg < 2:139040/251‑2 (MQ=14) aGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCTCCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGc < 1:113012/250‑1 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCgg < 1:171709/251‑1 (MQ=255) gCCTGATAAGCGTAGCGCATCAGT‑CATTTGTCACCATTGCCGTATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGa < 1:79882/251‑1 (MQ=14) gATAAGCGTAGCGCATCAGG‑CATTTGTCCCCATTGCCGGATGCGGCGTGACCGCCTTAT‑CCGGCCTACGAAGGGCGCAAGATGCTTTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTTATAACCCCAGCACCCTCTGTAGCGGACATa < 2:248545/251‑1 (MQ=14) aTAAGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATaa < 1:126641/251‑1 (MQ=255) aaGCGTAGCGCATCAGG‑CATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAT‑CCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATaaca < 1:78326/251‑1 (MQ=255) | TTTTGCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGG‑CATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTAT‑CCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACA > NC_000913/339689‑340162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |