New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	13 (0.330)	12/482	1.7	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

ATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACA  >  NC_000913/1979034‑1979498                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                    ataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgcaggtaagttgatgactcatgatgaatcctgttctatggctccagatgaaaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATaa                                                                                                                                                                                                                         <  2:194615‑M1/13‑1 (MQ=255)                                          cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTCAAAAGt                                                                                                                                                                               <  2:22145‑M1/55‑1 (MQ=255)                                           gatgacttccaccatgttttgccatggcagaatctgatccatgcgcgtcaagaaaatctcttttctggactgacggcgcttactgctgcattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctctggctccagatgacaaacatgttctcatatcagagacttgttagcaccttccttaaCATAAATGTCTAAGGAATACTTTTGTTTTGGGTGTATTTCAATCAGTTAAAAAGtt                                                                                                                                                                              <  2:124755‑M1/56‑1 (MQ=255)                                                            tttgccatggcagaatctgctccaggcgggacaagaaaatctcttttcggggctgacggcgcttactgctgaattcattgttggcgaaggtaagttgatgactcatgatgaatcctgttctatggctcgagatgacaaacatgatctcatagcagggacttgttcgcacctgtcttaaCATAAATGTATAAGGCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                                                                                                                                              >  1:400054‑M1/179‑250 (MQ=255)                                                                       agaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                                                                                                                                                   <  1:215972‑M1/83‑1 (MQ=255)                                                                                                                                 tgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc                                                                                        <  1:145177‑M1/142‑1 (MQ=255)                                                                                                                                   aattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                      <  1:127278‑M1/144‑1 (MQ=255)                                                                                                                                                                       atgaatcctgttctatggctccagatgacaaacatgatctcatatcagggaattgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGAt                                                   <  1:356393‑M1/179‑1 (MQ=255)                                                                                                                                                                                     gtggctccagatgacaaacatgaactcagatcagggacttgtgcgcacattccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGATACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGGTGCGAACAGTCAAAATAACTAACCGTAAAAAATAATCTGCTATAAATAATCACTTTCATGAAATACCAGATAAGCTTTTTTTAAAc                                    <  2:98355‑M1/194‑1 (MQ=255)                                                                                                                                                                                              gatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTa                           >  1:22145‑M1/49‑251 (MQ=255)                                                                                                                                                                                                         tgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                                                                                                                                                     <  1:109062‑M1/65‑1 (MQ=255)                                                                                                                                                                                                         tgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                                                                                                                                                     >  2:109062‑M1/38‑102 (MQ=255)                                                                                                                                                                                                                       ggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGTGATGTTGCGCACAGCCAAAATAACTTTCCGTAAATAATCATCTGCTATTAATAATCACTCTCATGCAATCCCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACa  >  1:2097‑M1/24‑251 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                    ATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACA  >  NC_000913/1979034‑1979498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.