| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 79,040 | A→G | A138A (GCT→GCC) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 79,040 | 0 | A | G | 96.4% | 84.3 / ‑4.0 | 29 | A138A (GCT→GCC) | leuD | 3‑isopropylmalate dehydratase subunit LeuD |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (14/13); total (14/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.18e-01 | |||||||||||
GATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTAGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAGCGCCCTGATACTGCGGGAAGTTCAGCACGAAGT > NC_000913/78810‑79275 | gATAGCGGAAATCCCGGTCATGTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATTGCGTCGTCGTGCTGCAAGTTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAg < 1:433660/251‑1 (MQ=255) gAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGAAGGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCACATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCCCAAACAGTTCGTcc > 2:462917/1‑251 (MQ=255) cccGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCAGCATGCAGTGGCGGCGGAAGGCATCGATGGTAAATCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTc < 1:65162/251‑1 (MQ=255) ggTCATGTGAACGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCTGCGGAAGGCATCGATGGTAAAGCGATAGGTGTTCTCTCCCGCTTTCACCGCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTACACCAGTGCAAACAGTTCGTCCACTTCTGc < 1:36075/251‑1 (MQ=255) gACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGGCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCtt < 2:76069/250‑1 (MQ=255) aCCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGCTACCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCCCTTCTGCATCGCTTa > 2:11445/1‑250 (MQ=255) aaatgggATTAAGTCAGAATCGCAGGTTGTTTCGCATCCTAAGCGGGAAAGGCGTCGTCGTGCTGCAAGGGAAGTCCAATACTGTCCAGACCGTTCACCATGCAGTTGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCCCCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCAc < 2:144088/247‑1 (MQ=255) ggggATTAGTTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGGCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGTTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGACGAAATGGATCCCCGGATTAGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCgg < 2:165238/251‑1 (MQ=255) aaTTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGAAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCagcagc > 2:464680/1‑251 (MQ=255) aaTTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAAGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCCCCAACAGTTCGTCCCCTTCTGCATCGCTTAATTTCACCGGCagcagc > 2:462047/1‑251 (MQ=255) cTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGt > 1:80873/1‑249 (MQ=255) ttCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGTAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGttg > 1:335621/1‑248 (MQ=255) cATAAGCGGCAAGGGCGTCGTCGTGCTGCAAGGTAAGCCCAATCCTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGTCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTagaa < 1:307023/250‑1 (MQ=255) ggCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATTCTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAg < 2:356424/251‑1 (MQ=255) ggCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAACTGGATCCCCGGATTGGCTTTCACCCACGCAAACAGTTCGGCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGGTGTTAAAGCTATAGCCGgagagaattac > 2:105699/1‑242 (MQ=255) gtcgtcggGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCTGTTGCTGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTTGCTTTCACCAGCGCAAATAGTTCGTCCACTTCTTCAGCGCTTAATGTCACCGGCAGGAGCTGGTTGTTAAAGCTATTGCCGTAGAAGACGTCAGCAAAACTc < 2:242053/250‑1 (MQ=255) gtGCTGCAAGGTAAGCCCAATACTGTACAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCAACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCa > 1:117990/1‑250 (MQ=255) gcAAGGTAAGCCCAATACTGTACAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGTTAAAGCGATAGGTTTTCTCTCCCGCTTTCTCCTCTTGCGCTTCCAGTTCCACGTCGAAATGGATTCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGGCCTCTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATca < 2:31588/249‑1 (MQ=255) aCTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGt > 1:123111/1‑251 (MQ=255) ggcggAAGGCATCGCTGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACCGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTTAAGCTATTGCCGTAGAAGATGTCCGCAAAACTCGGCGCAATCACCACTTTAAAACCATAGTCGGTCACTGCCCAGGGCGCGTGCTCAcgc > 2:405048/1‑251 (MQ=255) ggTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATcac < 2:274141/177‑1 (MQ=255) ggTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATcac > 1:274141/1‑177 (MQ=255) cccGCTTTCACCTCTGGCGTTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTGCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACGCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGGGCGTCCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCaa < 2:184730/248‑1 (MQ=255) ttCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAgc > 2:113367/1‑251 (MQ=255) tGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCTAACAGTTCTTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAGCGCCCTg < 1:212091/248‑1 (MQ=255) gcgcTTCCAGATCCACGTCGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTATGGCCAGCAAAATAGAAGCGCCCTGTTAc > 1:195698/1‑251 (MQ=255) cGTCGAAATGGATCCACGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAACGCCCTGATCATGCGGGAAGTTCAGc > 2:267033/1‑251 (MQ=255) cGAAATGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAGCGCCCTGATACTGCGGGAAGTTCAGCAc < 1:26875/250‑1 (MQ=255) aTGGATCCCCGGATTGGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAGCGCCCTGATACTGCGGGAAGTTCAGCACGAAGt < 1:464680/251‑1 (MQ=255) | GATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAGACCGTTCATCATGCAGTGGCGGCGGAAGGCATCGATGGTAAAGCGATAGGTTTTCTCTCCCGCTTTCACCTCTTGCGCTTCCAGATCCACGTCGAAATGGATCCCCGGATTAGCTTTCACCAGCGCAAACAGTTCGTCCACTTCTGCATCGCTTAATTTCACCGGCAGCAGCTGGTTGTTAAAGCTATTGCCGTAGAAGATGTCAGCAAAACTCGGCGCAATCACCACTTTAAAACCGTAGTCGGTCAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAGCGCCCTGATACTGCGGGAAGTTCAGCACGAAGT > NC_000913/78810‑79275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |