| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,003,276 | A→C | S111A (TCT→GCT) | fliC ← | flagellar filament structural protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,003,276 | 0 | A | C | 83.3% | 63.9 / 8.8 | 30 | S111A (TCT→GCT) | fliC | flagellar filament structural protein |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base C (16/9); total (18/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.20e-01 | |||||||||||
TAGCACCAAAAGCAGTTACTGGAGCACTAGTGGTAACTGTATCGTTATTTTTAACGCTAAAACCATCAAGGCCAAGAGTTTTAGCATCAATCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGAAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAAACGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGC > NC_000913/2003030‑2003499 | tcgCACCAAAAGCAGTTACTGGAGCACTAGTGGTAACTGTATCGTTATTTTAAACGCTAAAACCATCAAGGCAAAGAGTTTTAGCATCAATCTGCTTCAGATCGATAGTGATAGGCTGGTTATCATTTGCGCCAACCTGGATTTTCCTGGAGCCATTTTTTGCCAACACGTCCACGCCGTTGAACTGCTTCTGGCCAGATACGCCGTCACTTTCCTCCAGACGAGTTTTAATTTCGTCCTGGATAGCAGAc > 2:20083/3‑251 (MQ=255) cAAAAGCAGTTACTGGAGCACTAGTGGTAACTGTATCGTTATTTTTAACGCTAAAACCATCAAGGCCAAGAGTTTTAGCATCAATCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATc > 1:197395/1‑250 (MQ=255) ttgAGCACTAGTGGAAACTGTATCGTTATTTTTAACACTAAAACCATCAGGGCCAGCAGTTTTAGCATCAATCTGCTTCAGATCGGTAGCGATAGTCTAGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGACGTTGAACTGGGTCTGACCAGAGACGCGGTCACTTTCATCCAGACGGGATTTAATTTCGTCCTGGATCGCAGACGGATATGACTCGGAGtt > 2:247584/3‑249 (MQ=255) tcaccgTATCGTTATTTTGCACGCTAAAACCATCAAGGCCAAGAGTTTTAGCATCAATCTGCTTCAGAACGATAGTGATAGTTTGGTTATCATTTACGCCCAACTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGTACTGGGTCTGACCAGATACGCGGTAAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGATAGTACCGATAGTGGcc > 2:397316/6‑251 (MQ=255) cGCTAAAACCATCAAGGCCAAGAGTTTTAGCATCAATCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGcac > 1:79258/1‑250 (MQ=255) aaCCATCAAGGCCAAGAGTTTTAGCATCAATCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGt < 1:341666/251‑1 (MQ=255) aTCAAGTCCAAGAGTTTTTGCATTAATCTGCTTCAGATTGATAGTGATAGTCTGTTTTTCTGTTGCGCCAACATGGTTTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGTCTTTGAACTGGGTCTGACCAGATACGCGGTCAATTGCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGTCTGTACCGTCAGTTCACGCTCC‑CGCTGTAAgt < 2:15820/251‑1 (MQ=255) aaGAGTTTTAGCATCAATCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGa < 1:396656/251‑1 (MQ=255) cATCAATCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAgc > 1:376446/1‑251 (MQ=255) aaTCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCCCGCCGTTGAACTGGGTCTGACCAGATACGCGGGCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGCCAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGGCAGTTCA‑ACACAACGCGGTAAGTTGTTGTTGGTTTCGGCCCgcgcgc > 2:431761/1‑251 (MQ=255) tCAGATCGATAGTGATAGTCTGTTTATCATTTGCGCCAACCTGGATTTTCATGGGGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCgg < 1:291071/249‑1 (MQ=255) cAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCggtgg > 1:88390/1‑251 (MQ=255) gatagtCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGATCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATAAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCAAA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGGGGTCTGCGCAACgg > 1:100709/1‑251 (MQ=255) atagtCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGAAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACa > 1:221290/1‑223 (MQ=255) atagtCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGAAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACa < 2:221290/223‑1 (MQ=255) cTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTTATCCAGACGGGATTTAATTTCGTCCTGGATAGAAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCAGGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATAc > 1:180230/1‑251 (MQ=255) gTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCCCGCACA‑CGCTGGAAGGTGTTGTTGATTTCGGACAGCGCCCCTTCGGTGGTCTGCGCAACGgagaaaacgt > 2:307862/1‑245 (MQ=255) ttacATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGGTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGTTGGTCTGCGCAACGGAGATACcgtc < 2:161967/247‑1 (MQ=255) gcgcCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGAAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGtt < 2:78992/251‑1 (MQ=255) gcCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTAc > 1:138551/1‑251 (MQ=255) cAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACgg < 2:376446/251‑1 (MQ=255) tCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTTATCCAGACGGGATTTAATTTCGTCCTGGATAGAAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCAGGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGt < 2:180230/250‑1 (MQ=255) cATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGt > 2:124941/1‑132 (MQ=255) cATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGt < 1:124941/132‑1 (MQ=255) gTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTc < 2:1950/124‑1 (MQ=255) gTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTc > 1:1950/1‑124 (MQ=255) aCGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGa < 1:120165/244‑1 (MQ=255) aCGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGAGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTTATGTTAGTGGTGaaagtcgg > 2:120165/1‑246 (MQ=255) aCCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGAGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAAACGGTTAGCAATCGACTGACCCCCTg > 1:293077/1‑251 (MQ=255) aCGGGATTTAATTTCGTCCTGGATAGCAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAAACGGTTAGCAATCGACTGACCCCCTGCGTCATCCTTCGCGCTGTTAATACGc > 1:85592/1‑250 (MQ=255) | TAGCACCAAAAGCAGTTACTGGAGCACTAGTGGTAACTGTATCGTTATTTTTAACGCTAAAACCATCAAGGCCAAGAGTTTTAGCATCAATCTGCTTCAGATCGATAGTGATAGTCTGGTTATCATTTGCGCCAACCTGGATTTTCATGGAGCCATTTTTTGCCAGCACGTTCACGCCGTTGAACTGGGTCTGACCAGATACGCGGTCAATTTCATCCAGACGGGATTTAATTTCGTCCTGGATAGAAGACAGATCAGACTCAGAGTTAGTACCGGTAGTGGCCTGTACCGTCAGTTCACGCACA‑CGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAAACGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGC > NC_000913/2003030‑2003499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |