New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	3 (0.070)	24 (0.560)	23/486	0.8	88.9%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

ACGCCATTCATGGCCATATCAATGATTTTCTGGTGC‑GTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTC‑‑AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAAC  >  NC_000913/1979025‑1979510                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                acggctggcagagctatttCAATGATTATCTGGTGCTGTAC‑GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTC‑‑AAATACACCATCATACACTAAATCAGTAAGTTGGTAGCATCAcccttat                                                                                                                                                                                                                                             <  2:328227/233‑5 (MQ=11)    ttccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATa                                                                                                                                                                                                                                              <  1:160931‑M1/4‑1 (MQ=255)         gcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggatccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGta                                                                                                                                                                                                                                        >  1:135870‑M1/242‑251 (MQ=255)         cATGGCCATATCAATGATTTTCTGGTGC‑GTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTC‑‑AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCAcccgcgaaggtttc                                                                                                                                                                                                                                      >  1:300324/1‑239 (MQ=11)           tGGCCATATCAATGATTTTCTGGTGC‑GTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGAAACTGCACAGGGGGGACCGCTGATAGAAACAGAAGC‑ACCTGAGCCCCCCCAAAAAACACCA‑CATACCCTAAATACGTAAGTTGGCAGCCTCACCCacctaaaagggca                                                                                                                                                                                                                                    >  2:286395/1‑238 (MQ=11)                    cgccggccattaccagccttggggtaaaacggctcgctgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACt                                                                                                                                                                                                                             >  1:453998‑M1/231‑251 (MQ=255)                    cgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATAc                                                                                                                                                                                                                              >  1:287530‑M1/231‑250 (MQ=255)                                             aaaacggctcgatgacttccaccatgttttgccatggcagaaactgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgctccttccttaaCATAAATGTATAAGTCATACTTTTGGTTTGGGTGTATTTCAATCt                                                                                                                                                                                                     >  1:303203‑M1/206‑250 (MQ=255)                                                 cggctcgagttcttccaccatgttttgccttggcagaatctgcgccatgcgggacaagaaaagctctgtgctggtcgtacggcgcttactgctgaattcactgtcggcgaatgtaagttgatgactcatgatgaatcctgttctatggctccagaggacaaacatgatctattatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTaa                                                                                                                                                                                                >  2:178053‑M1/202‑251 (MQ=255)                                                      cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtcggacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttgcttaaCATAAATGTATAAGTCATCCTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                                                                                                             >  2:215206‑M1/197‑249 (MQ=255)                                                                        actgccataacagaatctgctcaatgcgggacaagaaaatctcttttctggtctgtcggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggatccagatgaccaacatgatctcatatcaggtacttgttcgcaccttccttaaAATAGATGTCTAATTCCTAATTTTGTTTTGGGTGTATTTCAATATGTTAAAAAGtttttcgttacgcacgca                                                                                                                                                                          <  2:92978‑M1/72‑6 (MQ=255)                                                                                  cagaaactgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagtgacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                                                                                                                                                               >  1:61517‑M1/169‑251 (MQ=255)                                                                                    gaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                                                                                                             >  1:176841‑M1/167‑251 (MQ=255)                                                                                                       caagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                                                                                                                          <  1:374047‑M1/104‑1 (MQ=255)                                                                                                           aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt                                                                                                                                      <  2:222537‑M1/108‑1 (MQ=255)                                                                                                                               acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATTTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt                                                                                                                  <  1:195979‑M1/128‑1 (MQ=255)                                                                                                                                    gcttactgccgaaatcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTAAAAATAACTCACCg                                                                                                             >  2:160931‑M1/119‑251 (MQ=255)                                                                                                                                                          ggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTTATACTTTTGTTTTGGGTGTATTTCCATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                       >  1:231975‑M1/97‑251 (MQ=255)                                                                                                                                                              aaggtaagttgatgcctcatgatgaatcctgttatatggctccagatgacaaaaatgatctcatatcagagccttgttcgcaccttccttaaAATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGATAACAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATAGAAATGGGAAGTTGCACACAgtcaaaataacacaacgtaaataaacataagacataaataatc                                                                                   <  2:443977‑M1/159‑20 (MQ=255)                                                                                                                                                                    agttgattactcatgatgaagcctgttctatggctccagatgacaaacatgatcgcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTc                                                                             >  2:435239‑M1/87‑251 (MQ=255)                                                                                                                                                                                   atgaaacctgttctatggtcccagattacaaacatgatctcatatcagggacttgttcgcacctgacttaaCATAAATGTATAAGTTATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATa                                                              >  2:181241‑M1/72‑251 (MQ=255)                                                                                                                                                                                     gaatcctgttctatggctccagaggacaaacatgatctcatatcagggacttgatcgcaccttccttacCATAAATGTATAAGTCATACTTTTGCTTTGGGAGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAACAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAACATAGATCACAGTAAATAATCATCTGCTATAAATAATCCCTTTCATGCAATACCAGATa                                                              <  1:451688‑M1/180‑1 (MQ=255)                                                                                                                                                                                                           atgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAc                                      <  1:63049‑M1/204‑1 (MQ=255)                                                                                                                                                                                                                  acatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                                                                                                                          >  2:102971‑M1/41‑128 (MQ=255)                                                                                                                                                                                                                  acatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                                                                                                                          <  1:102971‑M1/88‑1 (MQ=255)                                                                                                                                                                                                                                        tgttctcacctttctttaCATAAATGTATAAGTCTTACTTTTGTTGTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACaaaga          >  2:151388‑M1/19‑250 (MQ=255)                                                                                                                                                                                                                                                ccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCACTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGTTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATAAAAAgaaaggaaac  <  2:13740‑M1/240‑5 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                ACGCCATTCATGGCCATATCAATGATTTTCTGGTGC‑GTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTC‑‑AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAAC  >  NC_000913/1979025‑1979510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.