| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 401,670 | Δ728 bp | [phoA] | [phoA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 401670 | 402397 | 728 | 37 [3] | [7] 41 | [phoA] | [phoA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 401669 | 3 (0.070) | 34 (0.810) | 32/470 | 0.3 | 88.4% | intergenic (+23/‑78) | iraP/phoA | anti‑adaptor protein IraP/alkaline phosphatase |
| ? | NC_000913 | 402398 = | 6 (0.140) | coding (652/1416 nt) | phoA | alkaline phosphatase | |||||
CAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACAAAAGCCCGGACACCAGAAATGCCTGTTCTGGAAAACCGGGCTGCTCAGGGCGATATTACTGCACCCGGCGGTGCTCGCCGTTTAACGGGTGATCAGACTGC > NC_000913/401425‑401904 | cAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaac > 1:437659‑M1/1‑245 (MQ=255) agaagaagaGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcg < 1:284‑M1/251‑12 (MQ=255) gtgtgCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCATCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcgg > 1:382280‑M1/1‑219 (MQ=255) cAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgca < 1:411156‑M1/251‑40 (MQ=255) aGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaac < 1:449356‑M1/251‑45 (MQ=255) ttGGAGATTAGCGTCAATGCAATGCTACGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGAACAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGAATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCTTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaaccgttgc < 2:10182‑M1/250‑51 (MQ=255) gTCACTGCAAAGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaacc < 2:335222‑M1/251‑64 (MQ=255) tCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTat > 1:204899/1‑249 (MQ=255) gCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggt < 1:265886‑M1/251‑70 (MQ=255) aTGCTTCGCAATATGGAGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGGCCGATGCCAGCATTCCTGAAGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAGAGTTAATCTTTTCAACAGATGcttaacgctcgtaccgacgatacgcgtggctgaggagcaaacacctttgctgaaccggacaccgctcgggc > 2:163650‑M1/1‑179 (MQ=255) atatGGGGCAAAAGGTACAACAGCTGTTGATTGACTATGTAGAGGGGGAGCTGTAAGAGGTAAATACCGATGCCAGCATTCCTGACGACGATACGGATCTGCTGCGCTATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGCTAATCTTTTCAACAGCTGcttaacgtgcgtgccgacgttacgcttggcggcggcgcaaaaaccttggctgaaacggcaaccgctggtgaatggcagggaa < 2:18656‑M1/251‑83 (MQ=255) cAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctg < 1:49540‑M1/251‑91 (MQ=255) aCCAACATCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGGAGTCCCCGATGCCTTCATTCCTGACGACGTTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGtttaacgctcgtgccgacgttactcttggcggcggcgcaaaaacctttgctgaaacggcaaccgcgggtgaatggcagggaaatacgcggcgtgaac < 2:278727‑M1/251‑98 (MQ=255) cGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggccgggaaaaacgctgcgtgaacaggcaa > 2:349368‑M1/1‑146 (MQ=255) agagGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagtt < 2:437659‑M1/251‑123 (MQ=255) agagGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagtt < 1:94584‑M1/251‑123 (MQ=255) aGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcct < 1:184609‑M1/251‑140 (MQ=255) gTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGCAGCCTCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgggccgccgttacgcttggcggcggcgcaaaaacctttgcggaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctca < 1:313884‑M1/251‑142 (MQ=255) gTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctca < 1:463076‑M1/251‑142 (MQ=255) gacgaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctaactgaattcggtgacggaagcgaatc > 1:298761‑M1/1‑83 (MQ=255) gctgcGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctg < 1:418083‑M1/249‑181 (MQ=255) gcgcGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttg < 1:166798‑M1/250‑185 (MQ=255) aCGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttg > 1:49413‑M1/1‑58 (MQ=255) tAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctg > 1:185316‑M1/1‑55 (MQ=255) aaaGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCAc > 1:470585/1‑145 (MQ=255) aaaGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTGTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAACCAAAGCAc < 2:470585/145‑1 (MQ=255) gTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgcggcgtgaacaggcacaggcgcgtggttatcagttggtgagcgaggctgcctcaccgacgtcggggacggaagcgaatcagcaaaaacccctgcttggcctggtgtctgtaggca > 2:357463‑M1/1‑48 (MQ=255) ttATTGAAGCATACTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaat > 1:95435‑M1/1‑47 (MQ=255) aatTGAAGCATCCTCGACAGTAAAAAGTTAGTGTTTTCAACAGCTGcttaacgctcgtgccgacgttacggttggcggcggggaaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaatcgctgcgttaacaggcacaggcgcgtggttatcaggtggtgagcgatgctgcctcactgaattcggtgatggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaata < 1:181700‑M1/250‑206 (MQ=255) aTTGAAGCATCCTCGTCAGTACAAAGTTACTCTTTTCAACAGCTGcttaacgctcgtgccgacgttccgcttggcggcggcgcaaaaacctttgctgaacaggcaaccgctggtgactggcagggaaaaacgctccgtgaacaggaccagacgcgtggttatcagttggtgagcggtgctgcctcactgaattcggggacggaagcgcatccgcaaaaaccactgcttggcctggttgctgacggc > 2:284872‑M1/1‑45 (MQ=255) aTTGAAGCACCCTCGTAATTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgccgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaactcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggc < 1:284872‑M1/246‑202 (MQ=255) gAAGCATCCTAGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgcccgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgc < 1:70923‑M1/250‑209 (MQ=255) tCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgtccgggccgactttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgc < 1:184451‑M1/250‑215 (MQ=255) cTCGTGAGTAACAAGTTACTCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggagactggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggctatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgagcg > 2:194671‑M1/1‑34 (MQ=255) aGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgcgctggctag < 1:17927‑M1/251‑224 (MQ=255) aaaaGGTAATCTTTTCACCAGCTCcttaacgctcttgccgccgttacgcttcgcggcggcgcaaaatcctttgctttgaccgcacccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtttttatcagttggtgagcgatgctgcctcactgaattcgttgccggaagcgaatcagcaaaatcccctgcttggcctgtttgctgacggcaatatgccagtgcgctggctaggacc < 1:188673‑M1/251‑228 (MQ=255) atcatttcaacAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgggaacaggcacaggcgcgtggttagcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaccccctgcttggcctgtttgctgacggcaatatgtcagtgcgctggctaggaccgaaagcaa < 2:61013‑M1/247‑236 (MQ=255) | CAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACAAAAGCCCGGACACCAGAAATGCCTGTTCTGGAAAACCGGGCTGCTCAGGGCGATATTACTGCACCCGGCGGTGCTCGCCGTTTAACGGGTGATCAGACTGC > NC_000913/401425‑401904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |