| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,788,492 | G→T | E20* (GAA→TAA) | aroH → | 3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,788,492 | 0 | G | T | 91.3% | 46.5 / 1.0 | 25 | E20* (GAA→TAA) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base T (18/3); total (20/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-02 | |||||||||||
TGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCGAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTG > NC_000913/1788253‑1788717 | tGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTACGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCt > 2:26673/1‑250 (MQ=255) gCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACgg > 1:153378/1‑251 (MQ=255) aaTGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTGTTATCATGCTAACCACCCTGCGCGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGCACTCCGTACTGCGCGTATTGAGAGCCTGTTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAActc > 2:404231/1‑249 (MQ=255) aTTAGCTTATTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTc > 2:4363/1‑250 (MQ=255) ccatgcaacccccccGGCGGGGTGTGACCCCCCTCGCACTTAAAATCAGCGGGGATTGGTTTATCGTAATGCGCATCACTCCCCGGCAGTCCTGCCGTAGAAGAAAAAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTACGTACGGCGCGTATTGAGAGCCTGGTACCCCCCCCCTAACCCGCGCTCCGGTACCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAAtt < 1:26673/239‑1 (MQ=255) cATGCTAACCACCCGGCGAGGTGGGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGacttt > 2:113434/1‑247 (MQ=255) accCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAACTTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTCTTGAGAGCCTGGTCACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCTCCACCCATGTCACCGACTCCCGCAGCAGAGTTGAAAAAATACt > 2:413509/1‑251 (MQ=255) cccGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTACCGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAACAATACTg > 2:486558/1‑251 (MQ=255) gCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGtt > 1:432026/1‑251 (MQ=255) gATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTg > 1:266041/1‑251 (MQ=255) gATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCGAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTg > 1:256893/1‑251 (MQ=255) gTTTATCGTGCTGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGAGTATTGAGCGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAACAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCACCTGcacg > 2:498820/1‑247 (MQ=255) aacaaATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCGAACTCGCGCTACGGTATCCCGTAACGCCTGGCCTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCCCCGCTGCAGTGGAGTACGc > 1:175662/1‑236 (MQ=255) cTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGAAACGCCTGGCGTCGCCACCCATGTCACCGACTACCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGAATGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTAGGCAGTCACTGCGCa > 1:448172/1‑250 (MQ=255) ttGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAaccagtac > 2:168150/1‑251 (MQ=255) gAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCCATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAaccagtaccatcacc > 2:251771/1‑246 (MQ=255) ccGAACTCCGTACTACGCGTATTGAGAGCCTGGAAACGCCAGCCTAACTCGCGCTACGATATCCCGTAACACCAGGCATCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAACATACTGAATGGTGACGATAAACGTCTGTTGGCCATTATTGGCCCCTGCTTAATCCACGATCTCACCGCTGCAATGGAGCAACCCCCCCGTATGCAGTCGCTGCGCAACCCGTACCAGTGACGGCGGGAAATc > 2:15509/2‑251 (MQ=255) aCGAACCCCGTCCTGCGCGTTTTGAGAGCCTGGTACCGCCCGCCTACCCCGCGCTACGGTACCCCGTACCGCCTGGCGCCCCCCCCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATc < 1:486558/251‑1 (MQ=255) gAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCTCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCg > 1:166834/1‑250 (MQ=255) gAACTCCGTACTGCGCATATTGAGAGCCTGGTCCCGCCCGCCTACCTCCCGCTACGGCATCATGGAACACCTGGCGTAGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGTCCCTTATCGATCCCCGCTCTCACAGCTGCAATGGAGTACGCCACCAGTCTGCAGTCGCTGCGCACCCAGAACCAGTCACGGCTGGAAATCGt > 2:270402/1‑251 (MQ=255) cccGTACTGCGGGTATGGAGGGCTTGGTACCGCCCGCCAACCCCGCGCTACGGTTCCCCGTACCGCCGGGCGTCCCCCCCCATTTCCCCGCCTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATg < 1:481104/250‑1 (MQ=255) ccGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATgc > 1:241036/1‑251 (MQ=255) tACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCTAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATgcgcc > 2:212542/1‑250 (MQ=255) gtatgaagagCCTGGTAACCCCCCCTAAAGTCGCGCGACGGTACCCCTTAACGCTTGGCGCCGCCACCAATGCCACAGCCTACCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTAtttt < 1:136624/245‑1 (MQ=255) aattaagaacctagTAACCCCCGCCTAACTCGCGCCAGGGTACCCCGAAACGCGTGGCGTCGCCCCCCATGCCCCCACCTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTg < 1:498820/238‑1 (MQ=255) | TGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAATGAACAGAACTGACGAACTCCGTACTGCGCGTATTGAGAGCCTGGTAACGCCCGCCGAACTCGCGCTACGGTATCCCGTAACGCCTGGCGTCGCCACCCATGTCACCGACTCCCGCCGCAGAATTGAAAAAATACTGAATGGTGAAGATAAGCGACTGTTGGTCATTATTGGCCCCTGCTCGATCCACGATCTCACCGCTGCAATGGAGTACGCCACCCGTCTGCAGTCGCTGCGCAACCAGTACCAGTCACGGCTGGAAATCGTAATGCGCACCTATTTTG > NC_000913/1788253‑1788717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |