Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,169,836 A→G L180P (CTG→CCG)  ldtC ← L,D‑transpeptidase LdtC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,169,8360AG100.0% 116.2 / NA 35L180P (CTG→CCG) ldtCL,D‑transpeptidase LdtC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (11/24);  total (11/24)

CAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAGTGTTGATGATATTCACTTTGGTGCCTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCAGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTACCGAATTTTTACCCGGCGGGTAGTAATAGAGACGCAGCTCCGCAATGTTGATCACAATGCCTTCGCGCGG  >  NC_000913/1169603‑1170077
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 
cAACCAGACGCGCACCGTTTGGTTCGGCAGAGTCTTTTATCGGAGTGTTGATGATATTCACTTTGGTGCCTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTAcc                                                                                                                                                                                                                                  <  1:303442/251‑1 (MQ=255)
aatccagacgcgctgctgttGGTTCGGCTGAGACTGTTATCGGAGTGTTGTTGATATTCACTTTGGTGCCGGGGGTGACCTGGCGAAAGAGTGTTTTGATATCGTCATCCCGCAGTCGAATCCAGCAAGAACTTACCCGCATGCCAAGGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTAcc                                                                                                                                                                                                                                  <  2:178176/233‑1 (MQ=255)
       aCGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAGTGTTGATGATATTCACTTTGGTGCCTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGAAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCCCTACCGCAGGc                                                                                                                                                                                                                            >  2:147058/1‑250 (MQ=255)
          cgcACCGTTTGGTTCGGCAGAGACTTTTATCGGAGTGTTGATGATATTCACTTTGGTGCCTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACt                                                                                                                                                                                                                        <  1:425753/251‑1 (MQ=255)
              ccGTTTGGTTCGGCAGAGACTTTTATCGGAGTGTTGATGATATTCACTTTGGTGCCTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAAt                                                                                                                                                                                                                    <  1:348040/251‑1 (MQ=255)
                               gaCTTTTCTCGGAGTGTTGATGAGATTTCCGTGGGTGTCTGGGGTGACCTGGCTAAAGTGGTTTTTGATTTCGTCATCCCGCAGACTAATACAGCTAAAACTTACCCCCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAATCGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCTGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAAc                                                                                                                                                                                                   <  2:393061/251‑1 (MQ=255)
                                     tATCGGAGTGTTGATGATATTCACTTTGGTGCCTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGgcg                                                                                                                                                                                              <  2:444334/250‑1 (MQ=255)
                                         gatgtgttgatgttctccatttgggTGCCTGGGGTGTCTATGCTAAAGGGTGTTTTTATATCGTATACCCCCATACAAATACTCCCAGAACTGTCCCGCATGCCACTGCCGAAATCGCCGTTCGCACCAGGAAGCAAATAAGCGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCAATTGGGTTATCCGGTCCAGCCGTTACTACCGCAGGCAATGCAATTCCCTGTGCTGTATATCGGGCGCGGAt                                                                                                                                                                                         <  2:509697/228‑1 (MQ=255)
                                                                ggTGCCTGGGGTGACCTGTCGAAATAGTTTTTTGATACCGTCAACCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTCCCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCACATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGtt                                                                                                                                                                   <  2:304479/250‑1 (MQ=255)
                                                                     cTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGttt                                                                                                                                                             >  2:387968/1‑251 (MQ=255)
                                                                       ggggTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGc                                                                                                                                                           <  1:135145/251‑1 (MQ=255)
                                                                                        gagTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACgg                                                                                                                                          >  2:327292/1‑251 (MQ=255)
                                                                                                ggATATCGTCACCCCGCAGAAGAAAACAGCCAGAACTTACCCTCATGCCAATGCCGAAAGCGGCGGTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCAcc                                                                                                                                  <  2:422894/250‑1 (MQ=255)
                                                                                                        tCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGACATCGGCGTACGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGTCAACTCACTTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCAGTTGGCATCCAGGTTGGGCTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCgg                                                                                                                          >  1:163042/1‑251 (MQ=255)
                                                                                                          aTCCCGCAGACGAATACAGCCAGAACTTCCCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGgtg                                                                                                                        <  1:343523/251‑1 (MQ=255)
                                                                                                                   gACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCgtg                                                                                                                <  1:387968/251‑1 (MQ=255)
                                                                                                                    aCGAATACAGCCAGAACTTCCCCGTAGGCCAATGCCGAAATCGGCGTTCTCACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCgtgg                                                                                                               <  2:477968/251‑2 (MQ=255)
                                                                                                                             gCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTa                                                                                                      <  1:199282/251‑1 (MQ=255)
                                                                                                                                aGAACTTACCCGCATGCCAAAGCCGAAACCGGCGTTCGTACCATTAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACt                                                                                                   <  1:371702/251‑1 (MQ=255)
                                                                                                                                     ttACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGAcc                                                                                               >  1:195048/1‑250 (MQ=255)
                                                                                                                                         ccGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTATGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATAc                                                                                          <  1:147058/251‑1 (MQ=255)
                                                                                                                                           gCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGCCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCCCCTAACTGACCCATACCt                                                                                        >  2:354208/1‑251 (MQ=255)
                                                                                                                                             aTGCCAATGCCGAAACCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTAt                                                                                      <  1:502295/251‑1 (MQ=255)
                                                                                                                                               cccAATGCCGCACTAGGCGTTCGTACCCTAAAGCCAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGATCTACGTTCCAGCCGGCACTACCGCCTGAAACTCAATTACCTGAGCTTTCTAACGGGCGCGGCTGTTTGCCGTTGGCGCACAGGTTGGGATTGCACAGTTGTCTGAACAGCCGGTCACCATTGTGGGTGTCAGTGTTGAACCACCTAACTGACCAAAACCTATTg                                                                                    >  2:361691/2‑251 (MQ=255)
                                                                                                                                                   atgacGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTAACCACCTAACTGACCAATACCTATTGGATa                                                                                <  1:154515/247‑1 (MQ=255)
                                                                                                                                                               gCGTTCGTCCCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCATGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTTTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTAcc                                                                      <  1:474789/249‑1 (MQ=255)
                                                                                                                                                                      tACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCTCGTTTGTCTGAAACGGTGGACACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATCCCTATTGGATACACGGTTACCGAAttttt                                                              >  2:183161/1‑250 (MQ=255)
                                                                                                                                                                      tACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTAACGAAttttt                                                              >  1:485117/1‑250 (MQ=255)
                                                                                                                                                                         cATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTACCGAATTTTTAccc                                                          <  1:147389/251‑1 (MQ=255)
                                                                                                                                                                             aaGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGTCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACTTTTGTCTGAAACGGTGGTCACCATTGACGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTACCGAATTTTTACCcggcg                                                      <  1:347040/251‑1 (MQ=255)
                                                                                                                                                                                aaaaTAACCGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCAAGCCGGCACTACCGCAGGCAACTCAAATCCCTGTGATTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCCCGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCGAACTGACCAATACCTATTGGATACACGGTTACCGAATTTTTACCCGGAgggg                                                   >  1:293385/2‑250 (MQ=255)
                                                                                                                                                                                            cccATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACGGACCAATACCTATTGGATACACGGTTACCGAATTTTTACCCGGCGGGTAGTAATAGAGAc                                       <  2:50244/250‑1 (MQ=255)
                                                                                                                                                                                                          gACGAATCGCATGATGGCCCATTGGGTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATGCCCGGTGCTTTATAACGGGTTCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTACCGAATTTTTACCCGGCGGGTAGTAATAGAGACTCAGCTCCGCAATg                         <  1:362347/251‑1 (MQ=255)
                                                                                                                                                                                                                               ttGGGTTAACCGGTCCAACCGGCACTTCCGCAGGCAACTCAATTCGCTGTGCTTTATAACGGGCGCGGATGGTTGCCGTTGGCGTCCAGGTTGGGTGTGCGCGTTTGTCGGAAACGGTGGTCGCCATTGTCGGTGTCAGCGTGTCACCAACTAACTGACCAATACCTATTGGATACACGGTTACCGAATGTTTACCCGGCGGGTAGTAATAGAGACGCAGCTACGCAATGTTGATCACAATGCCTTcg       <  2:163042/248‑1 (MQ=255)
                                                                                                                                                                                                                                 gggTTATCCGGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTACCGAATTTTTACCCGGCGGGTAGTAATAGAGACGCAGCTCCGCAATGTTGATCACAATGCCTTCGCgcgg  >  2:213880/1‑251 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 
CAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAGTGTTGATGATATTCACTTTGGTGCCTGGGGTGACCTGGCTAAAGAGTGTTTTGATATCGTCATCCCGCAGACGAATACAGCCAGAACTTACCCGCATGCCAATGCCGAAATCGGCGTTCGTACCATGAAGCAAATAAACGCCGCCATAGGCCGCCAGACGAATCGCATGATGGCCCATTGGGTTATCCAGTCCAGCCGGCACTACCGCAGGCAACTCAATTCCCTGTGCTTTATAACGGGCGCGGATGTTTGCCGTTGGCGTCCAGGTTGGGTTTGCACGTTTGTCTGAAACGGTGGTCACCATTGTCGGTGTCAGCGTGTCACCACCTAACTGACCAATACCTATTGGATACACGGTTACCGAATTTTTACCCGGCGGGTAGTAATAGAGACGCAGCTCCGCAATGTTGATCACAATGCCTTCGCGCGG  >  NC_000913/1169603‑1170077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: