Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	257908–258676	258683	8–776	53 [0]	[2] 56	insB9–[crl]	insB9,insA9,[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 257907	0 (0.000)	53 (1.050)	49/476	0.1	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 family transposase B
	?	NC_000913	258684 =	0 (0.000)					pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

CCTCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCA  >  NC_000913/257659‑258148                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  cctcatcactttctgacggtaaattatTATACATCCCATTTAACCCGGTGTATCGGAATTTCGACAAAGGTTTTCAGGAAATCCCCGACTGGATCGAAAAACGCTTGTGTTAATAATTTGCTAAATTTTGCCAATGTTGTAAAACAGTTGCATCACAACTTGCGATAGCAATGACTTCACCGAGTGGACCCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag                                                                                                                                                                                                                                                 <  1:488721‑M1/239‑3 (MQ=255) ccTCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag                                                                                                                                                                                                                                                 <  2:192141‑M1/251‑3 (MQ=255)            gctgACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa                                                                                                                                                                                                                                      <  1:336473‑M1/251‑14 (MQ=255)                aCGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                                                                                                                                  <  1:38845‑M1/251‑18 (MQ=255)                   gttaattaGTAGATATCCCAGTTAACCCGTTGTATCTGAATTTTGTCAAAGTTCTTCAGGAAATCACTGACTGGAACGAAAAACGCTTTTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGATATAGCAATGACGTTACCTAGTGGACTCCTGAAGTGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAatggcaaagataatcgattc                                                                                                                                                                                                                               <  2:70813‑M1/248‑21 (MQ=255)                             agagATCCCATTTAACCCGGTGTATCGGACTTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACACGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgctt                                                                                                                                                                                                                     >  2:162801‑M1/1‑221 (MQ=255)                               agaTCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt                                                                                                                                                                                                                   <  1:220634‑M1/251‑33 (MQ=255)                                gaTCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGTTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgaatgtc                                                                                                                                                                                                                  >  1:7312‑M1/1‑218 (MQ=255)                                   cccATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                                                                                                                               >  1:347521‑M1/1‑215 (MQ=255)                                           accgggggtatcggaaTTTTGACAAAGGTCTTCAGGAAATCACCGCCCGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGCGTGGACACCCGAAGAGCAGATTGATCAAAAACTTTACCGAACTAGGCCCTTATATTCGTGAAGGAAagtgcaaagcatatagattctttttcgtatgcctggcggtatgg                                                                                                                                                                                                       >  2:543719‑M1/8‑207 (MQ=255)                                             ccGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                                                                                                                           >  1:96951‑M1/1‑205 (MQ=255)                                             ccGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                                                                                                                           <  2:96951‑M1/229‑25 (MQ=255)                                                         aaTTTTGTCAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                                                                                                                         >  2:392230‑M1/1‑193 (MQ=255)                                                                  aaaGGTCTTCAGGAAATAACCGACTGGATCGAAAACCGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAAGGCAGATTGATCAAAAAATTTACGGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtatggctgtatgcgtcaacgtgaaaccggcaccgg                                                                                                                                                                                 >  2:270368‑M1/1‑184 (MQ=255)                                                                    aGGTATTCAGGAAGTGAACGACTGGATCGAAAAACGATTGTGTTAAAAATTTGCTAAATATTGCCAATTTGGTAAAACAGTAGCATCACAAAAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGAAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGAAagggaaaagataatcgattctttttggattgtctggctgtatgagtcaacgagaaaccgggaacgga                                                                                                                                                                                >  2:529505‑M1/1‑182 (MQ=255)                                                                                      cGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggct                                                                                                                                                            <  2:425105‑M1/251‑88 (MQ=255)                                                                                      cGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATAACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGAAGATTGATAAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAAGGTAagtgaaaagataatcgattctttttcgattgtctggctgaaggcgtcaaggtgaaaccgccaccggaagtgagagagttctggtgcg                                                                                                                                                            >  2:464053‑M1/1‑164 (MQ=255)                                                                                             aactaaaaacgctTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCCCAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCATATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgagtctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgttaagtctggggctggtggag                                                                                                                                                     <  2:47735‑M1/247‑95 (MQ=255)                                                                                               cGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                                                                                                                                   >  1:384705‑M1/1‑155 (MQ=255)                                                                                                  aaaaCGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagc                                                                                                                                                <  1:139791‑M1/251‑100 (MQ=255)                                                                                                    aaCGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGCTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                                                                                                                              >  1:351895‑M1/1‑150 (MQ=255)                                                                                                          tgtgTTAAAAAATTGCTAAATTTTGCCAATTTGGTAAAACAGTTTCATCACAACAGGAGATAGCAATGACGTGTCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTTCCGCATTAGGCCCTTATAGTCGTGAAGGTAagtgcaaagataatcgcttctttttcgattgtctggctttatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgtaagg                                                                                                                                         <  2:343953‑M1/250‑107 (MQ=255)                                                                                                           gtgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgc                                                                                                                                       >  1:84248‑M1/1‑143 (MQ=255)                                                                                                           gtgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcg                                                                                                                                        <  1:290757‑M1/250‑108 (MQ=255)                                                                                                               tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagg                                                                                                                                    >  1:470604‑M1/1‑139 (MQ=255)                                                                                                                    aTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc                                                                                                                              >  1:432826‑M1/1‑134 (MQ=255)                                                                                                                              ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacct                                                                                                                     >  1:386038‑M1/1‑124 (MQ=255)                                                                                                                                ttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGCTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac                                                                                                                   >  1:197539‑M1/1‑122 (MQ=255)                                                                                                                                  gCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGAAACACGAAGAGAAGATTGATAAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgccaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgggaattctgaggctggtggatggagctggaagcgcaggaatcccgttttacctacagt                                                                                                                >  2:484431‑M1/1‑120 (MQ=255)                                                                                                                                   ccAATTTGGTAACACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGGGTGGACACCCGAAGAGCAGATTGATCCAAACATTTACCGCACTAGGCCCGTATCTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggaggttggagctggaagcgcaggaatcccgttttacctacagtt                                                                                                               >  1:50658‑M1/1‑119 (MQ=255)                                                                                                                                      aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagagcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgtaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacc                                                                                                            >  1:369897‑M1/1‑116 (MQ=255)                                                                                                                                                     tGCATCGCAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGAACAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttc                                                                                              <  2:200497‑M1/250‑150 (MQ=255)                                                                                                                                                       cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACAACCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAATGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgat                                                                                           >  1:465080‑M1/1‑99 (MQ=255)                                                                                                                                                            caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaacccggcaccggaagtgcgtgaattctggggctgggggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagc                                                                                      >  2:70142‑M1/1‑94 (MQ=255)                                                                                                                                                             aacaGGAGATAGCAATAACTTGACCGAGGTTACACCTGAAGAGCAGATTGATCAAAAAAGTTACCGCACTAGTCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctagctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggtgttggtagctcaggaatcccgttttacctacagttcccagtttggtctggtcgataaagca                                                                                     <  2:298808‑M1/251‑159 (MQ=255)                                                                                                                                                              acaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacaggtaccagtttggtctgttcgataaagc                                                                                      >  2:153081‑M1/1‑92 (MQ=255)                                                                                                                                                                   agaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgac                                                                               >  1:478184‑M1/1‑87 (MQ=255)                                                                                                                                                                        gCAATGACGTTACCGAGTGGACACCCGAAGAGCCGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtaaacgtgaaaccggcaccggaagtgcttgaattctggggctggtggatggggctggaagcgacggaatcccgttttacctacagttaccagtttgggctgttcgatcaagcaggcgactggc                                                                           >  2:388220‑M1/1‑82 (MQ=255)                                                                                                                                                                          aaagacgTGACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAAGGTAagtgcaaagataagcgattctttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggagggagctggaagcgcaggaatcccgtttttcctacagttaccggtttgggcggttcgataaatcaggcgactggaaga                                                                        <  2:275330‑M1/248‑172 (MQ=255)                                                                                                                                                                           aTGACGTTACCGAGTGGACACACGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtatgttcgataaagcaggcgactggaagag                                                                       <  1:162801‑M1/251‑173 (MQ=255)                                                                                                                                                                             gACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtg                                                                     <  1:179445‑M1/251‑175 (MQ=255)                                                                                                                                                                                            acacCCGAAGAGCAGATTGAACAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgttaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagaca                                                      <  1:543719‑M1/251‑190 (MQ=255)                                                                                                                                                                                             cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCAGTATATTCGTGAAGGTAagtgcaaagctaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgacttctggggctgggggatggagctggtagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggatgggtgttcgggtaaaaggcac                                                     >  2:436567‑M1/1‑61 (MQ=255)                                                                                                                                                                                                  gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactg                                                   <  2:192959‑M1/248‑193 (MQ=255)                                                                                                                                                                                                  gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactg                                                   >  1:192959‑M1/1‑56 (MQ=255)                                                                                                                                                                                                    agagCAGATTGATCAAAAAATTTACCGCACTAGACCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtg                                              <  1:368288‑M1/251‑198 (MQ=255)                                                                                                                                                                                                                     aaaTTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagca                             <  1:407625‑M1/251‑215 (MQ=255)                                                                                                                                                                                                                        tttACCGCACTAGGCCCGTATATTCGTGCAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacac                          >  1:336178‑M1/1‑34 (MQ=255)                                                                                                                                                                                                                           aCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccct                       <  1:23566‑M1/251‑221 (MQ=255)                                                                                                                                                                                                                                        cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccctgcgtgagtttca           >  1:51506‑M1/1‑18 (MQ=255)                                                                                                                                                                                                                                          tataTTAGTGAAGGTAagagcaaagatattcgattctttttctattatctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaggcgcaggaatcccgttttacctacagttaccagtttggtctgttcgctaaagcaggcgactggaagcgtgttccggtaaaagacactgaagtggttgaccgcccggagcacaccctgagtacgtttcacgg        >  2:378024‑M1/1‑16 (MQ=255)                                                                                                                                                                                                                                             atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtatggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccctgcgtgagtttcacgaga      <  1:270368‑M1/250‑238 (MQ=255)                                                                                                                                                                                                                                                cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccctgcgtgagtttcacgagaagct  <  1:57016‑M1/251‑242 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  CCTCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCA  >  NC_000913/257659‑258148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑