New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	35 (0.670)	33/492	0.6	97.2%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 323450	1 (0.020)					coding (1113/1428 nt)	ykgF	putative amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain

GTCGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCACGCGATCTTCC  >  NC_000913/323217‑323695                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      gTCGATAACGTGCGTTCTTAGGTGCTGGCCTCGGAATTTCGGGATGTGCTGCTCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCATGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACTCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaact                                                                                                                                                                                                                                       >  2:142095‑M2/1‑234 (MQ=255)    gATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGAGTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttatt                                                                                                                                                                                                                                   >  2:384504‑M2/1‑231 (MQ=255)               ttCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGAGATGGCTCTATTTATCCCGGGCCAATTGGTGGGGTGATTTTTCCGCTACTTGGCGGGTATTAAGATTTTAAAAATTTACCCTCCGCCCTCTCTTTATGCACAGCTTGTGAAAACGTGgggaatgactccaaattttttatagaggttt                                                                                                                                                                                                                        <  1:91246‑M2/251‑32 (MQ=255)                   gagggtctggcctCTGAATTTCGGGATGTGCTGCGCTGTATTCGCCGCGGGGCTTGTATGAATACTTGTGCGGCATATCGCCATATTGGCGGTCATGGATATGTCTCTATTTATCCAGGGCCAATTTGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAATATTTTAAAGATTTACTCTACGCCTGCTCTTGATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgt                                                                                                                                                                                                                    >  2:39027‑M2/7‑216 (MQ=255)                      ggtctggCCTCTGAATTTCGGGTTGTGCTGCGCTGTAGTCTCTGCGGGGCTTGTATGAATACTTTTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTGTCCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTTggtaatgactccaacttattgatagtgttttatgttca                                                                                                                                                                                                                 >  2:483080‑M2/4‑213 (MQ=255)                             ccTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatg                                                                                                                                                                                                          >  1:107472‑M2/1‑206 (MQ=255)                                ctGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCAGATTGGCGGTCATGGATATTGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCTCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgc                                                                                                                                                                                                         >  1:222325‑M2/1‑203 (MQ=255)                                 tGAATTTCGGGATGTGCTGCGCGTTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgccc                                                                                                                                                                                                       >  2:352416‑M2/1‑202 (MQ=255)                                                                                        ccGGCATATCGCCATATTGGCGGTCATTTATATGGCTCTATTTATCCAGGGGCAATTGGGGCGGGGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTTAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGgggaatgact                                                                                                                                                                                                                                             <  1:532361‑M2/157‑11 (MQ=255)                                                                                        ccGGCATATCGCCATATTGGCGGTCATTGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgact                                                                                                                                                                                                                                             >  2:532361‑M2/1‑147 (MQ=255)                                                                                            cATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccg                                                                                                                                           >  1:430653‑M2/1‑143 (MQ=255)                                                                                            aatatCGTCTTATTGGCGGTCAGGGATATGGCTCTATTTAGCCAGGGCCAATTTGTGCGGTGAATTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTGCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCt                                                                                                                                           <  2:14682/250‑1 (MQ=255)                                                                                                       agtggCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCGGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataacgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccggcccagccgtgccaggtgct                                                                                                                                >  2:35600‑M2/3‑132 (MQ=255)                                                                                                          ggCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                                                                                                                              >  1:425990‑M2/1‑129 (MQ=255)                                                                                                            cGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccatgccaggtgctgcctc                                                                                                                           >  1:420943‑M2/1‑127 (MQ=255)                                                                                                                       atGTCTCTATTTATCCAGGGCCCATTGGTGCTGTGATTTCACCGCTATTTGGCTGCTATAATGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGATAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgattttgtcatggagctccaccgattttgagaacgatagcgattaccttcccatccgtgccaggtgctgcctcagattcagttt                                                                                                                >  2:421233‑M2/1‑116 (MQ=255)                                                                                                                         ggCGCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGAGTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggtta                                                                                                               >  2:296293‑M2/1‑114 (MQ=255)                                                                                                                             ctATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACGTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc                                                                                                            >  1:286391‑M2/1‑110 (MQ=255)                                                                                                                               aTTTATCTCGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccg                                                                                                          >  2:457477‑M2/1‑108 (MQ=255)                                                                                                                                            cAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGCTTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaaattattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgcttttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgt                                                                                           <  1:358976‑M2/251‑157 (MQ=255)                                                                                                                                                  gTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGAATTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgatttccgtcccagccgtgccaggtgctgcctcagattcagggtatgccgctcaattcgctgcgtatatcg                                                                                     >  2:528142‑M2/1‑89 (MQ=255)                                                                                                                                                                 cGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtg                                                                      <  1:24753‑M2/251‑178 (MQ=255)                                                                                                                                                                 cGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgatgattacgtg                                                                      <  1:319383‑M2/251‑178 (MQ=255)                                                                                                                                                                         ggcggcTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATTCACAGCTTGTGACATCGTGggtaatgactccaacttattgatagttttttatgttcagataatgcccgatgactttggcatgcatctcctccgattttgagcacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcttatatcgcttgctgattacgtgcagcttt                                                               >  2:439399‑M2/1‑66 (MQ=255)                                                                                                                                                                           cggcTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttgtatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttccc                                                            >  1:400542‑M2/1‑64 (MQ=255)                                                                                                                                                                                     gattttaaagatttACCCTCCGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcggg                                                  >  2:143248‑M2/1‑54 (MQ=255)                                                                                                                                                                                              gatgtACCCTACGCCTGCTCTTTATGCACAGCTTGTAACAACGTGggtcttgcctccaacttattgatcgtgttttatgttcagataatgcccgacgactttgtcatgcagctccaacgattttgagaacgacagcgacttccgtcccagccgtgcaaggtgctgcctcagattcagattatgccgctcaattcgcggcgtatatcgcttgctgattacgtgcagctttcccttcaagcgggtttcatcac                                         <  2:29886‑M2/251‑207 (MQ=255)                                                                                                                                                                                                 ttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACCACGTGggtcatgaatcccacttattgatagtgttttctgttcagctaatgcccgatgactttgtcatgcagctccaccgattttgtgaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcacttacctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacatcg                                      <  2:282976‑M2/251‑210 (MQ=255)                                                                                                                                                                                                      cTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggcc                                   <  1:323877‑M2/249‑213 (MQ=255)                                                                                                                                                                                                           ccTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatggtcagataatgcccgatgactgtgtcatgcagctccaccgattgtgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatc                            >  2:37190‑M2/1‑32 (MQ=255)                                                                                                                                                                                                              gCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccg                          >  1:43798‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                tctTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtc                        <  1:395380‑M2/250‑224 (MQ=255)                                                                                                                                                                                                                     aTGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatcca                   >  1:494502‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                      tGCACAGCTTGTGACAAAGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacatcgacttccgtcccagccgtgccaggagctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttccattcatccgggattcatgcagcggccagccatccatcctccat                  <  1:383905‑M2/250‑230 (MQ=255)                                                                                                                                                                                                                        cacaGCTTGTGACAACGTGggtaatgactacaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatc               >  1:219858‑M2/1‑19 (MQ=255)                                                                                                                                                                                                                                     aaCGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtcaaagg  <  1:384400‑M2/251‑246 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      GTCGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCACGCGATCTTCC  >  NC_000913/323217‑323695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.