New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	32 (0.710)	31/490	0.5	94.1%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	2290476 =	2 (0.040)					intergenic (‑296/‑24)	yejO/narP	adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP

GAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGACAAGGTTGTAGTTTTCACTACATGTCCATACATAAAATGGGGTAACATTCACGCGCCTGGTAGCGTTACCAACGCTACGCTCAAACATAATGATTCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAATATGAAAGGTATGAGTGGCCTGGATACTCTCAATGCCTTGCGC  >  NC_000913/2290229‑2290724                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         atggtttccagcggataagggcgccggccattaccagccttggggtaaaacggcgcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctctttgctggtctgacggcgcttactgcttaattctctgtcggcgaaggtaagttgatgactcatgatgaaccctgttgtatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctttcCtaa                                                                                                                                                                                                                                                       <  2:402222‑M2/4‑1 (MQ=255)   ggtttccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgagctcatatcagggacttgttcgcaccgtccCtaat                                                                                                                                                                                                                                                      <  1:159039‑M2/5‑1 (MQ=255)         cagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAaacat                                                                                                                                                                                                                                               <  1:440018‑M2/12‑3 (MQ=255)                   gggcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatcgcttttctggtctgacggcgcttactgctgaattcactgtctgcgaaggtaagttgatgactcaggatgaaccctgtgctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAATCCTCAGTAGacta                                                                                                                                                                                                                                     <  2:361828‑M2/22‑1 (MQ=255)                         cggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggaccagcaaatctcttttctggcctgacggcgcttactgctgaattcactgtcggcgacggtaagttgatgactcatgatgaaccctgttctatgtctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAACCCTCAGGAGACTCCTATGc                                                                                                                                                                                                                               >  1:253673‑M2/224‑251 (MQ=255)                          ggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGcc                                                                                                                                                                                                                              >  2:289046‑M2/223‑251 (MQ=255)                                  ccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtaggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTCCTATGCCTGAAGCa                                                                                                                                                                                                                       >  2:199960‑M2/215‑250 (MQ=255)                                                        cgatgactgccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgagccctgttctatggctccagatgacaaacatgatctcatatcagggacttgtgctcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGCTGATGATtgt                                                                                                                                                                                                <  2:183740‑M2/59‑1 (MQ=255)                                                                  caccatgttttgccatggcagaatctgctccatgctgtacaagaaaatctcttttctggtctgacggcgcgtactgctgaattcactgtcggcgaagttaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcataacagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGGGATGATTGTGGATGatcat                                                                                                                                                                                      <  2:443081‑M2/69‑1 (MQ=255)                                                                      gattgattTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGACACGGTTGTAGTTTTCACTACATGTCCATACATAAAATGGGGTAACATTCACGCGCCTGGTAGCGTTACCAACGCTACGCTCAAACATAATGATTCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGATGATGATTGTGGATGATCATCCAc                                                                                                                                                                                  >  2:84227/1‑251 (MQ=255)                                                                                            gctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactggcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCg                                                                                                                                                               <  2:143638‑M2/92‑1 (MQ=255)                                                                                               ccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCTTCAGtt                                                                                                                                                         <  2:179688‑M2/98‑1 (MQ=255)                                                                                                   gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCAGTTATGCGACGCGGTGTTCGTCAGTTACTg                                                                                                                                                     <  1:314489‑M2/102‑1 (MQ=255)                                                                                                       gacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagctgacgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGAGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTAGTCAGTTACTGGAGc                                                                                                                                                 >  1:408248‑M2/146‑251 (MQ=255)                                                                                                             aaaatctcttttatggtctgacgtcgcttactgctgtattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagctgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTATCAGGTGATGATTGTGGATGATCATCCACTTATGAGATGCGTTGTTCGTCAGTTTCGGGAGCTTGAt                                                                                                                                            >  2:184030‑M2/140‑250 (MQ=255)                                                                                                                              ctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgcaccctgttctatggctcccgatgacaaacatgatctcatatcagggccttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACCCCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCATGGCTCTGAAgtgggc                                                                                                                          >  2:115370‑M2/123‑249 (MQ=255)                                                                                                                                 acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGcc                                                                                                                       >  1:325262‑M2/120‑251 (MQ=255)                                                                                                                                      gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGc                                                                                                                  >  1:182736‑M2/115‑251 (MQ=255)                                                                                                                                                       gACAAGGTTGTAGTTTTCACTACATGTCCATACATAAAATGGGGTAACAGTCACGCGCCTGGTAGCGTTACCAACGCTACGCTCAAACAGAATGATTCTAATAAAACCTCAGGAGACGACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAgcg                                                                                                 <  1:84227/251‑1 (MQ=255)                                                                                                                                                                     aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGGCGAAGCGGGCGACGGCGCGAGCGCTAGCGATCTGGc                                                                                    <  2:253673‑M2/167‑1 (MQ=255)                                                                                                                                                                                 catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCTACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGGCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTgg                                                                         <  1:422625‑M2/178‑1 (MQ=255)                                                                                                                                                                                    gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATc                                                                    <  2:439420‑M2/183‑1 (MQ=255)                                                                                                                                                                                       gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCTCTATCGATCTGGCGAATAGACTGGATATCGAc                                                                 <  1:287505‑M2/186‑1 (MQ=255)                                                                                                                                                                                          ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTg                                                              <  1:289046‑M2/189‑1 (MQ=255)                                                                                                                                                                                                   atggctccagatgacaaacatgatctcatatccgggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTAATGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGCGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTg                                                     >  2:232718‑M2/54‑251 (MQ=255)                                                                                                                                                                                                     ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTgg                                                    <  1:240478‑M2/199‑1 (MQ=255)                                                                                                                                                                                                            gatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAat                                            >  2:14391‑M2/45‑251 (MQ=255)                                                                                                                                                                                                              tgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAatat                                          >  2:93878‑M2/43‑251 (MQ=255)                                                                                                                                                                                                                   aacatgatctcatatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAATATGaa                                       >  1:250465‑M2/38‑249 (MQ=255)                                                                                                                                                                                                                             catatcagggacttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAATATGAAAGGTATGAGTgg                           >  1:372542‑M2/28‑251 (MQ=255)                                                                                                                                                                                                                                       acttgttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAATATGAAAGGTATGAGTGGCCTGGATAct                 >  2:12510‑M2/18‑251 (MQ=255)                                                                                                                                                                                                                                           gttcgcaccttccCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAAAAGACTGGATATCGACGTGATCTTGCTGGATCTCAATATGAAAGGTATGAGTGGCCTGGATACtctc              >  2:75414‑M2/14‑250 (MQ=255)                                                                                                                                                                                                                                                 acctgccCTAATAAAAACTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGAGATGAAAGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTAGCCGAAGCGGGCGACGGCGAGAGCGCTATCGAACTGGCGAATAGACTGGATATCGAAGTGATCTTGCTGGATCTCAATATGAAAGGTATGAGTGGCCTGGATACTATCAATGCCt       >  2:385500‑M2/8‑251 (MQ=255)                                                                                                                                                                                                                                                       cCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAATATGAAAGGTATGAGTGGCCTGGATACTCTCAATGCCTTgcgc  >  1:155610‑M2/2‑250 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         GAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGACAAGGTTGTAGTTTTCACTACATGTCCATACATAAAATGGGGTAACATTCACGCGCCTGGTAGCGTTACCAACGCTACGCTCAAACATAATGATTCTAATAAAACCTCAGGAGACTACTATGCCTGAAGCAACACCTTTTCAGGTGATGATTGTGGATGATCATCCACTTATGCGACGCGGTGTTCGTCAGTTACTGGAGCTTGATCCTGGCTCTGAAGTGGTCGCCGAAGCGGGCGACGGCGCGAGCGCTATCGATCTGGCGAATAGACTGGATATCGACGTGATCTTGCTGGATCTCAATATGAAAGGTATGAGTGGCCTGGATACTCTCAATGCCTTGCGC  >  NC_000913/2290229‑2290724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.