| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,423,338 | G→C | intergenic (+26/‑62) | ydaW → / → rzoR | putative uncharacterized protein YdaW/putative prophage outer membrane lipoprotein RzoR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,423,338 | 0 | G | C | 93.8% | 18.0 / ‑6.1 | 16 | intergenic (+26/‑62) | ydaW/rzoR | putative uncharacterized protein YdaW/putative prophage outer membrane lipoprotein RzoR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (6/9); minor base A (0/1); total (6/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCAGCATCGGTATCTCCGCTCTGGTTATCTGCATCGTCGTCTGCCTGTCATGGGGTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTT > NC_000913/1423189‑1423562 | gtcaccgcgattATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGTTGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGc > 1:210515/12‑251 (MQ=11) accgcgattATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGt > 1:202739/9‑245 (MQ=11) accgcgattATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGt < 2:202739/237‑1 (MQ=11) tATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGgtcgt < 1:202587/250‑1 (MQ=11) ccGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGgtcgtcg < 2:111449/247‑1 (MQ=11) atcatcgtcTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGATGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGt > 1:383440/5‑251 (MQ=11) ttAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGCAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGccacc > 1:330743/1‑251 (MQ=11) atgaCCGTGATAACCCCATTACCATCAAAGCCCAGCGCGACAAAAATGCCAGAAAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATTTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTATAGCGTAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCTCACCAAAGCAGTCTGGCAGTCAGTGCGTGAAGCCCCCACCGcc < 2:330743/248‑1 (MQ=11) aaCGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACGGAAGCTGGCGAACGCGGCAATTACGGACATGCAGATGCTTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTGGCCGCTGGTCGTCGTCGGTTGCACATCAAAGGGGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTgg < 2:132001/250‑1 (MQ=11) ccaattacccacaaagcccagtgctaCAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAGGTTGCTGCGGTCGATGCAAAATACACGATGGAGTTAGCTTAAGCTAAAGCTGAAAATGATGCCCTGTGTGATGATTTTGCCGCTGTTCGTCTTCGGTTGCACATCAAAGCAGTCTTTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATaa < 1:38158/226‑1 (MQ=11) ccccAGCGCGCCAAAAATGCCAGAGAACTGAAGCGGGCTAACGCGGTAATTACTGAAATGCAGAGGCGTAAGCGTGATGTTGCTGCGCTCGATGAAAAATACACTAAGGAGTTAGCTGAGTCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGGCGCCGGTTGCCCATCAAAGCAGACGGTCAGCCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCg < 2:383440/248‑1 (MQ=11) taCAAAAATGCCAGAGAGCTGAAGCTGGCGAACGCGGCAATTCCTGACATGCAGATGCGTCAGCGTGAGGTTACTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAACCTGAAAATTATGCTCTGCGTGATGATGTTGGCGCTGATCGTCGTCGGTTGCACATCAAAGCAGTCTGCCAGTCAGTGCGGGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCgcagtga > 2:273839/2‑242 (MQ=11) cAAAAATGCCAGAGAACGTAAGCGGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGGTGCCGCTGGTCGTCGTCGGTTTCTCATCAAAGCAGTCGGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGaca < 1:398690/251‑1 (MQ=11) aaaaaagtccAGAGAACTGAAGCTGGCGAACGCTGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCGGCGTTCGATGCAAAATACACGAAGGATTTAGCTGATGCTAAAGCTGAAAATGAGGCTCTGCGTGATGATGTTGCCGCTGGTCGTGCTCGGTTGCACATCAAAGCAGTCTGTCAGTCATGGCGTGAAGCCCCAACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGaca < 2:95236/243‑1 (MQ=11) aTGCCAGAGAACTGAAGCGGGCGAACGCGGCAATTACTTTCATGCAGATGCTTCAGCGTGATGTTGCGGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCTCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCt < 1:394977/251‑1 (MQ=11) aaGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTAttt > 2:350847/1‑251 (MQ=14) | AGCAGCATCGGTATCTCCGCTCTGGTTATCTGCATCGTCGTCTGCCTGTCATGGGGTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTT > NC_000913/1423189‑1423562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |