| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 59,968 | C→T | V127I (GTC→ATC) | rluA ← | 23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 59,968 | 0 | C | T | 97.2% | 103.2 / ‑5.4 | 36 | V127I (GTC→ATC) | rluA | 23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (21/14); minor base A (0/1); total (21/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.53e-01 | |||||||||||
CCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTAGCAACAAACGTGGTGCCATCGCTCTCGCTTCTGGTGATGCATAAAAACGATCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGATGCACCGATTCTGCCTGCGGATAATCACGCTGAATGCGCGTCATCAC > NC_000913/59724‑60211 | ccATACGCCGGATGTGTAATCGTCAACATCTCTGCATGTAGCCACAAACGTGGTGCCATCGCTCTCGCTTCTGGTGATGCATAAAAACGATCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTg > 2:378/1‑251 (MQ=255) cAACAGCTCTGCATGTAGCAACAAACGTGGTGCCATCGCTCTCGCTTCTGGGGATGCATAAAAACGGTCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAAGCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCTCCACTTCATATGCCGTCTGCGCAGGTTTACCCGTTTCGTACCAGATTTTCTTTTTCGGGCGGTTTGGCCAGTCGc < 2:329574/251‑1 (MQ=255) aCATCTCTGCATGTAGCAACCAACGTGGTGCCATAGTTCTCGATTCTGGTGATGCATAAAAACGATCGCCGACAATAGGATGCCCCAGCGCCAGCATATTCACACGCAATTGTTGCGCACGCCCGGCAATCGGTTTTAACACCACTCTTGCCGAGTTATCCGCCGCATCCTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCTGGCGGTTTGGACAGTCgtt > 2:276708/1‑248 (MQ=255) aGCAACAAACGTGGTGCCATCGCTCTCGCTGCTGGTGATGCATAAAAACGATCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACTCAATTGATGCGAACGCCCGGTAATCGGTTTTAACGCCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGAt < 1:29826/250‑1 (MQ=255) caacaaACGTGGTGCCATCGCTCTCGCTTCTGGTGATGCATAAAAACGATCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCGCTGCATATTCCGTCTGCGCAGGGTTACCCGTTTCGTAACAGATTGTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATcca < 1:162884/251‑1 (MQ=255) gtggtgCCATCGCTCTCGCTTCTGGTGATGCATAAAAACGATCGCCGAGCCTCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGcc > 2:63297/1‑219 (MQ=255) gtggtgCCATCGCTCTCGCTTCTGGTGATGCATAAAAACGATCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGcc < 1:63297/219‑1 (MQ=255) tccATTGCTCGCGCTTCTGGGGATGCATAAAAACGATCGCCGAGAAGCGGATGACCCAGCGCCAGCATATTCACTCGCAATTGATGCGAACGCTCGGTAAGCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCAGACTCCGCCTTTTCATATGCCGTCTGCGTATGGTTGTCCGGTTCGTAACAGAATTTCTGTGTCGTGTGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTg < 1:28162/249‑1 (MQ=255) cATCGCTCTCGCTTCTGGTGATGCATAAAAACGATCGCCGAGACTCGGCTGCCCCAGCGCCAGCATATGCACAAGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgg > 2:137404/1‑251 (MQ=255) gATGCATAAAAACGATCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGGCCTTCTGCGGGGGATGGATGCCCCCAGAc < 1:137404/251‑1 (MQ=255) gagcaacGGATGACCCAGGGCCAGCGTATGCACACGCAATTAATGCGAACGCCCGGAAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCTTCCTCCACCACTTCATATTCAGTCTGCGCAGGTTTACCCGTATCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCAACTCGCAAATACGCGGCAGATCCACCAGACCTTCTGCGGGCGATGGAGGACCCCAGACGGAGGACACATAcagattt > 2:377695/7‑244 (MQ=255) tGACCCAGCGCCAGCATATGCACACGCAATTGATGCGCACGCCCGGCAATCGGATTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGCTTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGCTCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGgctcgcg > 2:54428/1‑251 (MQ=255) ccAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGATTTAACACCACTCTTGACGCATTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGCCGAGGGCCACATACTGCTTTTTCGgctcgcgctcg > 1:166453/1‑251 (MQ=255) ccAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAAc > 1:356139/1‑251 (MQ=255) atGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGAGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGtt > 1:368897/1‑251 (MQ=255) aaTTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCg > 1:19351/1‑251 (MQ=255) aaTTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGAGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCg < 2:368897/251‑1 (MQ=255) cccGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTgg < 1:298020/251‑1 (MQ=255) gTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAg < 1:330427/251‑1 (MQ=255) aaTCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAgcg > 2:311167/1‑251 (MQ=255) aaTCGGGTTTTACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCTCTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTTCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTGTTCGGCTCGCGCTCGCGGAACGGGCGGTTTAACTCCCGCTCCGCGGTGGTGGTCAgcg < 2:346249/251‑1 (MQ=255) cGGTTTTAACACCACTCTTGCCGAGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGTTTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCAACAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACCTCCTGCTTTTTCGGCTCGCGCTCGCGGCACTCGCGTTTTAACTCCCGCTCACCGGCTTTGGTCCGCGccc > 2:126566/1‑250 (MQ=255) ggTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACGCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCAc < 1:54428/251‑1 (MQ=255) gTTTTAACACCACTCTTGCCGTGCTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACACCCGCTCCGTGGCTTTGGTCAGCGCCAcc > 2:340885/1‑250 (MQ=255) acTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATAATGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCCTTGGTCAGCGCCACTACAATCAcgcc > 1:191107/1‑251 (MQ=255) ctctTGCCGTGTTATGCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAACTCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTACCTCCCGCTCCGCGGCTTTGGTCCGCGCAACTACAATCccgccg > 2:22970/1‑251 (MQ=255) cGTGTTCTCCGACGAATACCCCAACACTTCATATTCAGTCCGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCCGTATGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCCGCGGGGGATGGATGCACCCAGACGCGGGCCACATACTGCTTTTTCGGCTAGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCCGCCCCACTACCATCACGCCGCTGGt > 2:253128/1‑249 (MQ=255) cgcATACTCCACCACTTCATATTCCGTAAGCGCAGGTGTACCCGTTTCGTAACCGATTTTCTGCTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCCGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGCACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCCCTACACTCATGCCGCTGGTAGCCATATCCAgtc > 2:232605/1‑249 (MQ=255) atatTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGCCCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAACCATATCCAGACGATGCACCGATTctgccc > 2:147530/1‑250 (MQ=255) gcAGGTTGACCCGTGTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGAGGCACCGATTCTGCCTGCGGATAATCACg < 2:22270/251‑1 (MQ=255) tACCCGGTTCGTAACAGATATTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCAAACCGCGGGCAACATACTGAATTTTCGTCTAGCGCTCGCGGAACTGGAGTGTTAACTCCCGATCCGCGGCTTTGGTCAGAGACCCTACAATCACGCAGCTGGTATACATATCAAGACGATGCACCGATTCTGCCTACGGATAATCCAGCTGAATg > 1:283357/1‑251 (MQ=255) aCCCGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGATGCACCGATTCTGCCTGCGGATAATCACGCTGAATg < 1:311167/250‑1 (MQ=255) cGTTTCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGGTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGATGCACCGAATCTGCCTGCGGATAATCACGCTGAATGcgcg > 2:396832/1‑251 (MQ=255) ttCGTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCGTCGGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGATGCACCGATTCTGCCTGCGGATAATCACGCTGAATGCGCGtc < 1:278964/250‑1 (MQ=255) gTAACAGATTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGATGCACCGATTCTGCCTGCGGATAATCACGCTGAATGCGCGtcatc > 1:382236/1‑250 (MQ=255) aaCAGATTTGCTGTTTCGGGCGGGTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGATGCACCGATTCTGCCTGCGGATAATCACGCTGAATGCGCGTCATCAc < 1:51/250‑1 (MQ=255) | CCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTAGCAACAAACGTGGTGCCATCGCTCTCGCTTCTGGTGATGCATAAAAACGATCGCCGAGAATCGGATGACCCAGCGCCAGCATATGCACACGCAATTGATGCGAACGCCCGGTAATCGGTTTTAACACCACTCTTGCCGTGTTATCCGCCGCATACTCCACCACTTCATATTCCGTCTGCGCAGGTTTACCCGTTTCGTAACAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGGGATGGATGCCCCCAGACGCGGGCCACATACTGCTTTTTCGGCTCGCGCTCGCGGAACTGGCGTTTTAACTCCCGCTCCGCGGCTTTGGTCAGCGCCACTACAATCACGCCGCTGGTAGCCATATCCAGACGATGCACCGATTCTGCCTGCGGATAATCACGCTGAATGCGCGTCATCAC > NC_000913/59724‑60211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |