| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,435,750 | C→T | G272G (GGG→GGA) | cpdB ← | 2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase/3'‑nucleotidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,435,750 | 0 | C | T | 97.1% | 94.1 / NA | 35 | G272G (GGG→GGA) | cpdB | 2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase/3'‑nucleotidase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (15/18); minor base G (0/1); total (15/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
TGCTGACGAACTGGCGTGTGGCATCGTGATCGGCTTTGAGTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCCCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGAACGACAACAACATCGGCACCTTTCTCGCGCATTTCAGGCACGTATTTGCGCACGGTTTCGGTAATATCATTCACCGTCACTTT > NC_000913/4435506‑4435983 | tGCTGACGAACTGGCGTGTGGCATCGTGATCGGCTTTGAGTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCg > 1:217939/1‑251 (MQ=255)tGCTGACGAACTGGCGTGTGGCATCGTGATCGGCTTTGAGTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCGTTGGCGATATCAGCTCCTTc < 1:150109/250‑1 (MQ=255) gactaaCTGTCGTGTGGCATCGTGATCGTCTTTGAGTGTTTCTACCAGCTTGCTGGCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGGCGAGCTTCCGATTTCGCCTGCGTCACCTGCCATTTTCCGCTGTCATTACTGATTTGTAAGTCGACCACACCAAGACTATCGCCCTTCATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGatat < 1:167540/247‑1 (MQ=255) gACGAACTGGCGTGTGGCATCGTGATCGGCTTTGAGTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGat < 1:215905/249‑1 (MQ=255) aaCTGGCGTGTGGCATCGTGATCGGCTTTGAGTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGc > 1:235324/1‑251 (MQ=255) gtgtGGCATCGTGATCGGCTTTGAGTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGCTTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGCGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCTAAATCt > 2:134578/1‑251 (MQ=255) gTGAGCGGCTTTGATTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATTTCGTAAATCGGTCTTGCTTCCTCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGATTTTTAAGTCGACCCCACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTGTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTAACTGGGa < 2:262793/251‑1 (MQ=255) tttCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCtt > 1:119610/1‑207 (MQ=255) tttCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCtt < 2:119610/207‑1 (MQ=255) tCTACCAGCGTGCTGTCTTCCGCCGCGAGTGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGc < 1:237696/250‑1 (MQ=255) cgaCCAGCTGGCTGGCTGCCGGCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGGCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGcc < 1:134578/248‑1 (MQ=255) cAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAAc > 2:101538/1‑250 (MQ=255) gctttCTTCCGCCGCGAGGGCTTTTTTATTAGCGTTGTCGTAATTCGGTCGTGCTGCCGCTTTCTCCTGCGTCACCTGCCATTTACCGCTATCATTACTGATTTGTAAGTCTACCACACCAAGATGATCGTCCCCCATGCCTGTCATTTCCGCCGGAACACCATTCAGCGTGCCGTCGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAACCATAATgg < 2:346981/247‑1 (MQ=255) cTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGc > 1:180204/1‑247 (MQ=255) cTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCGCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACAGAATGGc < 2:180204/247‑1 (MQ=255) gccgcGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGcc < 2:68598/251‑1 (MQ=255) ggATGTTTTATGAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTGCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAAttt < 2:37735/251‑1 (MQ=255) gTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGt > 1:312628/1‑251 (MQ=255) tAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATc > 1:297499/1‑170 (MQ=255) tAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATc < 2:297499/170‑1 (MQ=255) gCCTGCGTCCCCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACAGGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTGTCCGCCATCACTTTATACGGATc < 2:247871/251‑1 (MQ=255) gCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCgg < 1:237982/249‑1 (MQ=255) aCCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAAtgtg > 1:206415/1‑251 (MQ=255) tGTCATTACTGAGTTGTAAGTCGACCACCCCAAGATGATCGCCCCACAGGCCTGGCAGTACCGCCTGAACACCATTCAGCGTGCCTTTTGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCaaa < 1:191430/154‑1 (MQ=255) tGTCAATACTGAGTTGTAAGTCGACAACTCCACGCTGATCGCCCCGCATGCCTGGCTTTACAGCCGGAACACCCTTCCGCGTGCCTTTGGCGATATAAGCTCATTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCCTGGCCaac > 2:191430/1‑153 (MQ=255) gAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGAACGacaac < 1:215952/249‑1 (MQ=255) aCCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGGGCCAGAACGACAACAACATCGGCACCttt < 1:136580/251‑1 (MQ=255) aaGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGACCGACAACAACATCGGCACCTTTCTCgcgc > 1:248537/1‑250 (MQ=255) cGCCCCACATGCCTGGCATTACCGCAGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGAACGACAACAACATCGGCACCTTTCTCGCGCCTTTCAGGc > 2:383704/1‑251 (MQ=255) cccACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGAACGACAACAACATCGGCACCTTTCTCGCGCATTTCAGGCACg < 2:235324/251‑1 (MQ=255) cccACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGAACGACAACAACATCGGCACCTTTCTCGCGCATTTCAGGCACg > 1:13806/1‑251 (MQ=255) aTTCAGCGTTCCTGTGGCGATTTCAGCTCCTTCGATATCTGCAAAATCAGTACCCGGGAAAACGGCGTGCGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCCACATCCCTTTAAACGGCGCGGCATATAGCCCGGAATGTGCCAGAACGACAACAACAGCGGCGCCTTTCTCGCGCATTTCAGGCACGTATTTGCGCACGGTTTCGGTAAGATCATTCa < 2:133258/251‑1 (MQ=255) cAGCGAGCCTTTGGCGATATCAGCTCCTTCGATATCAGCAACATCTTTACCTGGGAAAACGGCGTGAGAATGGCCACACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATAGGCAGATAGCCCGGAATGTGCTAGAACGACCACAACATCGGCACCTTTCTCGCGCATTTCAGGCACGTATTTGCGAACGGTTTCGGTAATATCATTccacg > 2:232413/1‑247 (MQ=255) cGTGCCTTTGGCGATATCAGCACCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGAACGACAACAACATCGGCACCTTTCTCGCGCATTTCAGGCACGTATTTGCGCACGGTTTCGGTAATATCATTCACCGTCa < 2:215363/251‑1 (MQ=255) ccTTTGGCGATATCAGCTCCTTCGATATCAGCAAAATCTTTACCTGGGAAAATGGCGTGAGCATGGCCAAACATCATGGCGTTACCGCCCGGAATTTCACGGAGGTAATAAACTGAGATTTCCGCCGTCACTTTATACGGATCGCCAGATAGCCCGAAATGTGTCAGAACGACAACAGCATCGGCACCTTTCTCGCGCATTTCAGACACGTATTTGCGCACGGTTTCGGAAATCTCATTCCCCGTCAAttt > 2:302451/1‑251 (MQ=255) | TGCTGACGAACTGGCGTGTGGCATCGTGATCGGCTTTGAGTGTTTCTACCAGCTTGCTGTCTTCCGCCGCGAGGGATTTTTTATTAGCGATGTCGTAAATCGGTCGTGCTTCCGCTTTCGCCTGCGTCACCTGCCATTTACCGCTGTCATTACTGAGTTGTAAGTCGACCACACCAAGATGATCGCCCCACATGCCTGGCATTACCGCCGGAACACCATTCAGCGTGCCTTTGGCGATATCAGCCCCTTCGATATCAGCAAAATCTTTACCTGGGAAAACGGCGTGAGCATGGCCAAACATAATGGCGTTAACGCCCGGAATTTCACTGAGGTAATAAACTGAGTTTTCCGCCATCACTTTATACGGATCGGCAGATAGCCCGGAATGTGCCAGAACGACAACAACATCGGCACCTTTCTCGCGCATTTCAGGCACGTATTTGCGCACGGTTTCGGTAATATCATTCACCGTCACTTT > NC_000913/4435506‑4435983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |