| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,249,684 | C→T | A44V (GCT→GTT) | malM → | maltose regulon periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,249,684 | 0 | C | T | 97.4% | 116.0 / NA | 38 | A44V (GCT→GTT) | malM | maltose regulon periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (21/16); minor base G (0/1); total (21/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGCTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTGCTGATTCTTGATCAGAACATGACCCCATCAGCCTTCTTCCCC > NC_000913/4249446‑4249928 | aTAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGcaac > 1:171978/1‑250 (MQ=255) cggTTGTCAGTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGAGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGGTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCt < 2:330288/250‑1 (MQ=255) tCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGacac > 1:382966/1‑251 (MQ=255) ttATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCgg > 1:334247/1‑251 (MQ=255) tctCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGATCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGt > 2:327178/3‑251 (MQ=255) cGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTCCCGCAAAACCCCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGCTCAATCTaaa < 2:143152/251‑1 (MQ=255) gCCCCTCTGATTATCGGGTTTAGAGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGTGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGAGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACAAGCGACGAGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTAGCTCAATCTaaaaacc > 2:339531/1‑247 (MQ=255) cccTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGa < 1:217137/251‑1 (MQ=255) ccactGATTATCGGGCTTAGCGCGCTATTGCCTGGCTACCGCTGAGCGCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGac < 1:275756/248‑1 (MQ=255) aTCGGATTTAACGAGCTCTTGACTGGCTACCGATGAACCCCAGATTTTGACGTGCAAACAATGAACATGAATAAAAGTCTCCTCGTCCTCTGCTTATCAGAAGGGATACTGGCAAGCGCGCCTGGAATTAACCTTGCCGATGTTAACTACGTACCGCAAAACACCCGCGACGCACCCGCCATTCCATCTGTTGCGCTGCAACAACTCCACTGGCCACCGGCAGACCAATCTCAAACCCAGACCACCAAACt > 2:192020/1‑251 (MQ=255) gTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGa < 2:292907/251‑1 (MQ=255) gaGCGGGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATTAATAAAAGTCTCATCGTGCGCTGTTTAGCAGCAGGGTTACTGGCAAGCGCGCGTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCGAAACGCCAGCTGCGCGCCTGCCAGTCCATCGTTTGCGCTGCAACAACTGCGCGGGACGGCGGTCGATTAATCTAAAACCCAGTCCACCCAGCCGGCGAcc < 2:19852/249‑1 (MQ=255) gCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAAc > 1:346607/1‑251 (MQ=255) gCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTccc < 1:79326/251‑1 (MQ=255) gTGAAAACAATGAAAATGAATAAAATTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGATCCGGTtgc < 1:69646/251‑1 (MQ=255) aatgaaaatgaaTAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGCTGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTgg > 1:182665/1‑154 (MQ=255) aatgaaaatgaaTAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCa < 1:336800/180‑1 (MQ=255) aatgaaaatgaaTAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGACTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCAATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCa > 2:336800/1‑180 (MQ=255) aatgaaaatgaaTAAAAGTCTCATCGTCCTCTGGTTAGCAGCAGGGTTACTGGCAAGCGGGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCTACGCGCCAGCCATCCCACCTGTTGCGCTGCAACAACTCCCCTgg < 2:182665/154‑1 (MQ=255) cATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCACCCATTCCATCTGTTGCGATGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGTCGACCCGCGGCCAACAACTGAACGCTCCCGCAATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGcc > 1:50930/1‑250 (MQ=255) gTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACt > 1:198466/1‑251 (MQ=255) ccTCTGTTTATCAGCATGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTTCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCGGCAACAACTCGCCGGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTTGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGa < 1:381826/251‑1 (MQ=255) ccTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTg < 1:45705/250‑1 (MQ=255) ctGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGAccc > 1:104944/1‑251 (MQ=255) cagcagGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTg > 1:128164/1‑251 (MQ=255) gcagGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGAc > 1:272410/1‑251 (MQ=255) agGGTTACTGGCAAGCGCAACAGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACACGACAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGCTCAATCTAAAACCCAGCCCACCCAACTGGCGAACGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGCTGCTGCGTCCAGCGTCCCGGCAACCATTGACGAACTGACCCTGACGCCGAccc > 2:361046/1‑250 (MQ=255) gggTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTCGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAg < 1:105372/251‑1 (MQ=255) cAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGACGTGaac > 2:392114/1‑251 (MQ=255) ggAATTAGCCTTGCCGATGTTAACTACGTACTGCAAAACACCAGCGACGCGCCAGCCCTTCCATCTGTTGCGCTGCAACAACTCACCTGGCCACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGCCCAGCGAAGTGAACAAAAAAAcc > 2:61229/1‑249 (MQ=255) tGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCAGCTGGTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCTCCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTTCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTgcg < 1:238613/250‑1 (MQ=255) gCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTg > 2:116061/1‑238 (MQ=255) gCAAAACACCAGCGACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTg < 1:116061/238‑1 (MQ=255) cccAGCTACGCGCCAGCCATTCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCCGCCAACAACTGAACGTTCCCGGCATCAGTGTTCCGGTTGCTTCGTACAGCGGCCCGGCAAACATTGGCGAACTTGCCCTGACTCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTGCTGATTCTTGATCAGAACAt < 1:233619/250‑1 (MQ=255) gccagccaTTCCATCTGTTGCGATGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAAAAAACCCGCGTTTTTGCGCCGAACGTGCTGATTCTTGATCAGAACATGACCCCATc > 1:211267/1‑249 (MQ=255) ccaTTCCATCTGTTGCGCTGCAACAACTCACCTGCACACCGGTCGATCAATCTAAAACCCAGACCACCCAACGGGCGACCTGCGGCCAACAACGGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTTACCCTGACGCTGACAAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTGCTGATGCTGGATCAGAACATGACCCCATCAGCcttc < 2:359353/251‑1 (MQ=255) tCCATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTGCTGATTCTTGATCAGAACATGACCCCATCAGCCTTCTTcc > 1:345120/1‑251 (MQ=255) cATCTGTTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTGCTGATTCTTGATCAGAACATGACCCCATCAGCCTTCTTcccc > 1:256221/1‑251 (MQ=255) | ATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTAGCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGCTGCGCTGCAACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAACTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCCTGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTGCTGATTCTTGATCAGAACATGACCCCATCAGCCTTCTTCCCC > NC_000913/4249446‑4249928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |