| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,955,010 | G→A | D666D (GAC→GAT) | torZ ← | trimethylamine N‑oxide reductase 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,955,010 | 0 | G | A | 96.8% | 103.5 / NA | 31 | D666D (GAC→GAT) | torZ | trimethylamine N‑oxide reductase 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (14/16); minor base C (0/1); total (14/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCGTCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCAT > NC_000913/1954768‑1955246 | tGCACACATACCACGCCTTTTTTGATCCAGCCAGTCCCCAACTCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGTTCGCCCTTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATAGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTCAGCTGACTGTGTAAACGGAGTGCCGGCTGTGCGGTCAGAAGCTGTAAATGCTTCTCATCGGCGGt > 2:77431/1‑251 (MQ=255) aTACCACCGCTTTTTTGACCCCGGCACGCTCCCCCGCGCCTGTCCAAAACCTG‑CCACGGTTGTTCCCGACACGGCAC‑AGGTTGGCAGTCGGAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGGGTAAACGGTGTGCCGGATGTGCGGTCATAAGCTGTAACTGTTTCTCATCGGCGGTCCCTTTc < 2:183862/251‑1 (MQ=255) aCCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTc‑cc > 1:95374/1‑250 (MQ=255) cACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CAtt < 1:81621/251‑1 (MQ=255) aCGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGATTGCCGTATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTc‑ccttt > 2:254454/1‑247 (MQ=255) tttttGATCCCGACAGTCACCCCCGCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTAACTGTGTAAACGGTTTGCCGGATGTGCGGTCAGAGGCTGTAACTGCTTCTCATCGGCGGTaacattccctttatcacg > 2:339043/1‑234 (MQ=255) ttgatccagccagcaaccaccGCGCCTCTA‑AAAATATGACCACGTTTGTCCAAGACACC‑CACCAGACCGCCATTCGCAATACCAAAGCGCGCACCATCTTCGGTGTGAATAGTGATTGGTTAACGATCGGCGATCGCATATTTTTTCCGCAGTTCCGCACAGTTAAGATGTCTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCCCATGGGCGGTCACTTTC‑AATTAATCAggggg > 2:260225/16‑248 (MQ=255) ccccGTCAGTCACCACCGCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGagcca‑gc < 2:20576/250‑1 (MQ=255) gtcagtcaCCACCGCGCCTGTC‑AAAATCTGACCACGTTTGTTTCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTGTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCGTCTCATCGGCTGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAgg < 2:261878/251‑1 (MQ=255) aaaaTCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑ACTTCATCAGGAGCCC‑GCCAGGTTGGGTGTGCCGGGCACTCCtt > 1:38603/1‑251 (MQ=255) aaaaTCTGACCACGTTTGTTCCAGACACG‑CAACAGATCGCCATGCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGTTCGCATAGTTTTTACGCAGTGCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGGAACTGCTTCTCATCGGCGGTACCTTTC‑CACTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCTGGCAATCCtt < 1:153326/251‑1 (MQ=255) aaTCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTtat < 2:99303/251‑1 (MQ=255) cATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCGGCATAGTTAAGCTGACTGTGTAACCGGTGTGCCGGGTGTGCGGTCAGAAGCTGTAACTGCTTCTAATAGGCGGTACCTTTCACTTTTTTC‑CGAGGCC‑GCCAGGTTGGGGGTGGCGGGCAGTCCTTATTACCACAGTTTTCCAACGATTTTTGA‑TAGATTTCAAtt > 2:191581/1‑251 (MQ=255) tCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAAtttt < 1:135442/250‑1 (MQ=255) gCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCGTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGgt < 1:144667/190‑1 (MQ=255) cAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTGCCGCATATTTAAGCTGACTGTGTAAACGGTGTTCCGGATGTGCGTTCAGAAGCTGTAACGGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGc < 1:260225/251‑1 (MQ=255) gCGTTCAGCATCTTCGGGATGAATAGTGATTAGTTCACGATCGGCGATCGCATATTTTGTACGCAGTTCCGCATAGTTAAGCTGACTGTTTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTTTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACT‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTAc < 1:211651/251‑1 (MQ=255) ttCGGTGTGAATAGTACTTGGCTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTACGCTGACTGTGTAAACGGTGTACCGGATGGGCGGTCAGCAGCTGAAACTGCTTCTCATCGACGGGACCTTTC‑CCTTCAACAGGAACCC‑GCCAGGTTTGGGGTGCCGGGCAATCCTTATCGCCAAATTTTTACACCG‑CTTTTGAATAGATTTTATTTTTTCCACTTTGCGCACACACCGCAtttt > 1:136996/1‑251 (MQ=255) gAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CCTTCATCAAGAGCCA‑GCCAGGGTGGGTGTTCCGGGCCATCCTTATAGCCAAATTTTTCCAACG‑GTTTTTAATAGATTTTAATTTTGCCGCTTGGCCTACCCAGCGCCTTTTTCACCggg > 1:302526/1‑250 (MQ=255) aaTAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGAt < 1:248299/251‑1 (MQ=255) cGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATaa < 2:376818/251‑1 (MQ=255) gCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGagcca‑g < 1:210339/119‑1 (MQ=255) ttACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGAAACTTTC‑CATTCATCAGGAGCCA‑GCCAGGGTGGGGGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCCGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTgttcgtt > 1:179703/1‑251 (MQ=255) cTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTTTAGCCAAATTTTTCCAACG‑TTTTTTAATAGATTTCAATTTTTCCGCTTTGCGTACCCAGCGCATTTTTCACCCGATCGGCGCGGAAATCACCATAACGAACGTACTTTTCGTTCTTCTCGCTGTGGCGCATTTCgg > 1:85005/1‑250 (MQ=255) gACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGGGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑GTTTTTAATAAATTTCCATTTTGCCGCCTGGCGTACCCAGCGCCTTTTTTACCGGATCGGCGCGGAAATCACCCTAACGAACGTACTGTTTGTTTTTCTCTCTCTGGCGCATTTCGAt > 2:312897/1‑250 (MQ=255) tgtAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTAACTTTC‑CCTTCATCAGGAGCCAACCCGGGTTGGG‑GTTCCGGGGAATTCTTATTGCCAAATTTTTCCCACG‑TTTTTTGATAGAGTTCAATTTTTCCGCTTGGCGTACCCAGCGCATTTTTTACCCGATCGGCGCGGAAATCACCATAACGACCGTGCTGTTCTTTCTTCTCGCTGTTGCGCCTTTCggtacgttt > 2:399898/1‑243 (MQ=255) gggctggaggtgCGGTCAGAAGCTGTAACTGCTTCTCCTCGTCTGTACCGTTC‑CAGTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAAGCCTTATAGCCAAATTTTTCCAACG‑TTTGTTAATAGATTTCAATTTTGCCGCTTGGCGGACCCAGCGCATTTTTCACCGTGTCGTCGCTGAAATCGCCATAACTAACGTAATGTTGGTTCTTGTCGCTGTGGCGCATTTCGATCAGTTTATTTtgctg < 2:357824/241‑1 (MQ=255) ggATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCCTCAGGCGCCA‑GCCAGGTTGGGGGTGCCGGGCAATCCTTATAACCCAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTTCCGCTTGGCGTAACCAGCGCCTTTTTCCCCGGGTCGGCGCGGGAATCACCATAACGAACGTACTGTTCGTTCTTTTCGCTGGGGCGCATTTCGGTCAGTTTATTTTGTTTCCAGa > 1:290794/1‑250 (MQ=255) cGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCATTa < 1:236498/251‑1 (MQ=255) cGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCATTa < 1:9947/251‑1 (MQ=255) gTAACTGCTTCTCATCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCAt < 2:290794/250‑1 (MQ=255) | TGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTC‑AAAATCTGACCACGTTTGTTCCAGACACG‑CACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCGTCGGCGGTACCTTTC‑CATTCATCAGGAGCCA‑GCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACG‑TTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCAT > NC_000913/1954768‑1955246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |