| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 466,148 | G→A | P389S (CCA→TCA) | ybaE ← | uncharacterized protein YbaE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 466,148 | 0 | G | A | 97.1% | 109.8 / ‑4.4 | 34 | P389S (CCA→TCA) | ybaE | uncharacterized protein YbaE |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (18/15); minor base T (1/0); total (19/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
ATTAATCTGTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGGCAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGTTTGCCGATGGTGATTTGCACGGGATGCCGACAACTGGTTCCCAAATCTT > NC_000913/465922‑466390 | aTTAATCTGTCGCCCATCATGAGGTCTGCGTTTGCCTTTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTTTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGAt < 1:130541/251‑1 (MQ=255) tAATCTGTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATc > 2:319795/1‑250 (MQ=255) cTGTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAACAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGtt > 1:298225/1‑251 (MQ=255) gTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGttt < 2:188183/250‑1 (MQ=255) cGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTtct > 1:352593/1‑251 (MQ=255) catcatGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGGATGAAGTTCTATCGGTAGGGGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGGGATCAGGGTTTCTCCgc > 2:6241/1‑250 (MQ=255) aGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACCGCCTTCAGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGGGATCCGGTTTTCTCCCACTTCTa > 2:167420/1‑250 (MQ=255) gTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGAAATGCATGACTGGCGGTGATCAGGGTTTCTCCGACTTCTAAAGTTTGTAATAAAccc > 1:54802/1‑250 (MQ=255) ttttGCGTTATGAAAAATAATTGTGAGTTCACTGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATc < 2:352593/250‑1 (MQ=255) cctcttccgacctCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCa < 2:298834/239‑1 (MQ=255) ttCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGGTCAGGGTTTCTCCGACTTCTAAAGTTTGTAATAAACCGGATTGATGAATAATTGAGATCAATTTTCGCGCCTGACAGAGGGAGAGTc > 1:175334/1‑251 (MQ=255) cacaGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCa > 1:298834/1‑238 (MQ=255) cacaGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGGGAGTCg > 2:186412/1‑250 (MQ=255) cacaGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCg < 1:186412/250‑1 (MQ=255) gCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGAc > 1:121517/1‑251 (MQ=255) gCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATACACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGAATTCTAACGTTTGTAATCAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGGCGGGGACtttttcg > 1:64615/1‑248 (MQ=255) gTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCGGCGTCAAGGTTTTCGGTAGGTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTGGCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCaa < 1:140980/251‑1 (MQ=255) aGGCGTTCTGCCATGGTATGAAGTAGTATCGGTAGGGGATAACCCAGCGTCAAGGTTTTCGGTAGTTATACTTCAGCCGGTCCCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACGGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGGAACGTCAAATAGCaaa < 2:272736/250‑1 (MQ=255) tCTGCCATGGTATGAAGTTCTATCGGTAGGGGATAAACCAGCGGCAAGGTTTTCGGTAGTTTGACTTAATCCGGTACCTGACACTGCGGAATAGTCCAGCCTGTCAGTACTGCATGACTGGCGGCGATCAGGGTTTCTCCGCCTTCTTATGTTTGTGCTTAACCGGGTTGATGGGTAATGGCGATCACTTTTCGCGCCTGCCAGAGGGGGAGTCGGGGGCTTTTgcgccccgtccacttggaaaaacctc > 1:398889/1‑228 (MQ=255) tcctgggTATGAAGTTCTATCGGTATTTGATAAACCATCGCTAAGTTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGGTTTCTCCGACTTCTAACGTTTGTAATAAACCTGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCTAGATGGAGAGTCGGGGACTTTTGCGCAACTTCAAATAGCAAAAACCTAAAc < 1:133819/245‑1 (MQ=255) ccATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGaataa < 2:195333/174‑1 (MQ=255) ccATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGaataa > 1:195333/1‑174 (MQ=255) ccATGGTATGAAGTTCTATCGGTAGGGGATAAACCAGCGGCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGTAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGAGCACTTTGCGCGGCTGCCAGAGGGAGATTCGGGGACTTTGGCGCAACGTCAAATAGCAAATACCTAAACTg < 2:64615/251‑1 (MQ=255) tATGAAGTTCTATCGGTAGGGGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGGTTGATGAAAAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGGCTTTTGCGGAACGTCAAATAGCAAAAAACAAAACTGATGcgc > 2:341146/1‑249 (MQ=255) aGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCAAAAACCTAAACTGATGCCGCTACt < 1:319795/251‑1 (MQ=255) aGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCCGCCCGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCCAAAAACTAAACTGATGgcgccacc > 1:161618/1‑247 (MQ=255) ttCTATCGGTAGGCGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCCGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTTCCAGAGGGGGAGTCGGGGACTTTTTCGCCACGTTCAATACCCAAAACCTAAACTGGTGcccccactg > 2:134518/1‑243 (MQ=255) ggTTTTCGGTAGTTTGCCTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGtt < 1:341146/251‑1 (MQ=255) tcacccGGTCCCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGTTTGCCGATGGTGATTTGCa < 2:212096/246‑1 (MQ=255) ccTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCCGAGGGAGAGTCGGGGGCTTTTGCGCAACGTCAAATAGCACAAACCTAAACTGATGCCGCTACTGCACTGGCTGACCCCGTGCAGCTCCTCCCGGTTGCCGCTGGGGGTTTTCACGGGAAGcccg > 2:139285/1‑249 (MQ=255) aTGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGGTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGGCTTTTTCGCAACGTCAAATAGCAAAAACCTAAACTGATTCCCCTACTGACCTGGCTTACCCGTTGCAGCTCCTCCGGTTTGCCGATGGGGATTTGCACGGGGTGCCGACAAccgg > 1:138502/1‑248 (MQ=255) aaTAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGGTTGCCGATGGTGATTTGCACGGGATGCCGACAACTGGTTCCCa < 1:95723/251‑1 (MQ=255) aGTCCAGCCTGACAGTAATGCATGACTGGCGGTGATCAGGGTTTTTCCGACTTCTAACGTTTGTAATAAAACGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCAAAAAACTAAACTGATGCCGCTACTGAACTGGCTGACCCGTTGCAGCTCCTCCGGTTTGCCGAGGGAGATTTGCACGGGATGCCGACAACTGGTTCCCAAAt > 1:103432/1‑251 (MQ=255) ccAGCCTGACAGTAATGCGTGTCTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCTGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCTGGGACTTTTGCGCAACGGCAAATAGCAAAACCCTAAACTTATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGTTTGCCGATGGTGATTTGCTCGGTATGCCGACCACTGGTTCCCAAAGCtt < 2:1742/251‑1 (MQ=255) | ATTAATCTGTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCCAGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGTAGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGGCAGTAATGCATGACTGGCGGTGATCAGGTTTTCTCCGACTTCTAACGTTTGTAATAAACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCAAATAGCAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGTTTGCCGATGGTGATTTGCACGGGATGCCGACAACTGGTTCCCAAATCTT > NC_000913/465922‑466390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |