New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1411924	0 (0.000)	17 (0.500)	17/436	0.7	100%	coding (25/936 nt)	ttcA	tRNA cytosine(32) 2‑sulfurtransferase TtcA
	?	NC_000913	1434985 =	0 (0.000)					intergenic (‑579/+200)	ynaM/uspF	protein YnaM/universal stress protein F

CACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTAC  >  NC_000913/1434738‑1435226                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  cgggacgaacgtgtgccgggaagcccggttgcttttgcgcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatgtcttcgcccacgttacgacgcagacgtttttctaatttgttcagtttgtattgttctttcttAc                                                                                                                                                                                                                                                  <  1:133614‑M2/2‑1 (MQ=255)                  gggaagcccggttgcttttgatcgcggttaacagacaccagcgcaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCg                                                                                                                                                                                                                                >  1:299693‑M2/231‑250 (MQ=255)                   ggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGAc                                                                                                                                                                                                                              <  2:120232‑M2/22‑1 (MQ=255)                                     gatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgcagcaaattgcgcagaatctccagcatggtatagatgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAAt                                                                                                                                                                                                            >  1:241407‑M2/212‑251 (MQ=255)                                      atcgaggttaacagccaccagccaaaaattgattggcgtgctttgctgcaaattgcgcagaatctccagcatggtatatctgtcttttcccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgtccacgttacgactcatacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACGCAAtt                                                                                                                                                                                                           <  1:295688‑M2/41‑1 (MQ=255)                                                        cagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATAaga                                                                                                                                                                                          >  2:218171‑M2/193‑250 (MQ=255)                                                                          cgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaacaatgatgcgatggccttcttcaatcatatcgaagtcagcaatggcttcgaccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTATAAGCGACTCAATTCGTTATATGGCATCAGAAGCGTATGCGTCATGCCgg                                                                                                                                                                       >  1:71276‑M2/175‑251 (MQ=255)                                                                                 tgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgcagtcagcaatggcttcgcccacgttacgccgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGccc                                                                                                                                                                >  1:361091‑M2/168‑251 (MQ=255)                                                                                            gcgcagaatctccatcatggtatagctgtctttgcccccggagaggcaaaccatgatgcgatcgccttctgcaatcatattgaaggcagcaatggcttcgcccacgttacgacgcagacggtttggtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATGCTTTATATGGCATCAGAAGAGTAGGCGGCATGCCGGATCGCCCAGCATAAGaaa                                                                                                                                                     <  2:190524‑M2/95‑1 (MQ=255)                                                                                              gcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCCATTCGTTATATGGCATCAGCAGAGTATGCGTCATGcc                                                                                                                                                                         >  1:207454‑M2/155‑229 (MQ=255)                                                                                              gcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgcctgcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACGCAATTCGTTATATGGCATCAGAAGAGGATGCGTCATGcc                                                                                                                                                                         <  2:207454‑M2/75‑1 (MQ=255)                                                                                                                        tctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaaa                                                                                                                                        >  1:252848‑M2/129‑236 (MQ=255)                                                                                                                        tctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAATATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaaa                                                                                                                                        <  2:252848‑M2/108‑1 (MQ=255)                                                                                                                                      gaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAgg                                                                                                           >  1:282226‑M2/115‑251 (MQ=255)                                                                                                                                                                                     caatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATGAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCaa                                                            <  1:31931‑M2/184‑1 (MQ=255)                                                                                                                                                                                         ggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggtggtattgttcgttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAAtgt                                                         <  1:97369‑M2/187‑1 (MQ=255)                                                                                                                                                                                                 ccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGtt                                                <  2:204825‑M2/196‑1 (MQ=255)                                                                                                                                                                                                                                gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAAGCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTTCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTGAGTGTCAGCGCACAACCAGCACGGAGCAct                  <  2:299693/250‑1 (MQ=255)                                                                                                                                                                                                                                 ttCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGGTTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCActct                >  1:251378/1‑251 (MQ=255)                                                                                                                                                                                                                                        tGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGCATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGAATGGCACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAACCCGCAACAATGTGCGGGCGGTAGTGTCAGCGCAAAAACAGCACGGAGCACTCTGCGTGAc         >  1:153240/1‑251 (MQ=255)                                                                                                                                                                                                                                            ttGTTCTTTCTAACTAATTTCTTGATTTTGCGCCATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGAACATTTGCGAAATGAATCAAAAAACCCGCAGCAATGTGCGGGCGTTTGTGTCAGCGCACAACCAGCACGGGGCACTCTGCGTGACGccc     >  2:254013/1‑249 (MQ=255)                                                                                                                                                                                                                                                 ctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCCTGCCGGCACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGAGTGTATGGTACGGATTTGAGGGGAAAATGTCAGAACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGGGCACTCTGCGTGACGCACTAc  >  1:192271/1‑249 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  CACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTAC  >  NC_000913/1434738‑1435226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.