| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,367,750 | Δ176 bp | [pspF] | [pspF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1367750 | 1367925 | 176 | 26 [0] | [1] 28 | [pspF] | [pspF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1367749 | 0 (0.000) | 26 (0.690) | 22/486 | 0.6 | 100% | coding (164/978 nt) | pspF | DNA‑binding transcriptional dual regulator PspF |
| ? | NC_000913 | 1367926 = | 0 (0.000) | intergenic (‑14/‑153) | pspF/pspA | DNA‑binding transcriptional dual regulator PspF/phage shock protein A | |||||
CAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGAT > NC_000913/1367678‑1368176 | tagttggctgccgccaacgatctccagttcaccgtactcactaacgcgcaataatttctcctgccccatcatcggagccgaagcgagttcatcaagcaatcgcgtaccaccgtcggcacgttcaaatctcccaggatgacgtttttgcgcaccggaaaacgctcccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggcaataaaggccccttgccaacACt > 2:345681‑M2/249‑251 (MQ=255) gccgccaacgcgctccagttcaccgtactcaatcacgcgcaataatttctcctgcaccatcatcggagccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgagcagttaagggaaataaacggcccttgccaacACTTGTTAgtgt > 1:373594‑M2/240‑251 (MQ=255) gctccagttcaccgtactcaatcacgcgcaataatttcgcctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAAc < 2:212364‑M2/23‑1 (MQ=255) ccacgcgcaataatttctcctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgactgttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcatttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGtt < 1:45528‑M2/44‑1 (MQ=255) gcgcaataatttctcctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgctcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTGATTCGCTAACTCATCCTGGCATGGTGCTgttggtt < 1:92112‑M2/48‑4 (MQ=255) cctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCt < 1:180017‑M2/62‑1 (MQ=255) catcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATc < 1:48288‑M2/71‑1 (MQ=255) agcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATaaaa < 1:204086‑M2/83‑1 (MQ=255) gttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTgg < 1:123484‑M2/89‑1 (MQ=255) catcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACGTGTTAGTGTAAGTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCAc < 1:167024‑M2/92‑1 (MQ=255) atagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcgtaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGt < 1:202192‑M2/101‑1 (MQ=255) ggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTcagc > 1:124335‑M2/135‑249 (MQ=255) aatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTg > 1:378747‑M2/125‑251 (MQ=255) gacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCCGAAATc > 1:71493‑M2/112‑250 (MQ=255) tttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAgg < 1:124581‑M2/145‑1 (MQ=255) caccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgacaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGCAATCAAGAGGACAACAt > 1:181404‑M2/100‑251 (MQ=255) tcccccgcttcgttaccaaacagttcggaatccagccgattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTAttt > 2:275012‑M2/89‑251 (MQ=255) cagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGGTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAAACAAGAGGACAACATTATGGGTATTTTTTCGCGCTTTGCCTACATc < 2:394577‑M2/183‑1 (MQ=255) ttggaatccagcatattttcagttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTTTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGTGTATTTTTTCTCGCTTTGCCTACATCGTg < 1:132435‑M2/186‑1 (MQ=255) cggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGa > 2:152887‑M2/64‑250 (MQ=255) aacgcagattttaatttaacgcagcgcagttaagggacataaacggccctttccaacACTTGTTAGGGTAATTCGCTAAATCATCCTGGCATGCTGCTGTTGATTCTTCAATCAGATCTTTATACATCAAAAAGATAAAAACTTGGCACGCAAATTGTATTACCAGTTCAGCAGGACAATCCTGAACGCAGAAATCAACAGGACAACATTATGGGTATTTTTCCTCGCTTTGCCGACATCGCGAATGCCa > 2:105860‑M2/58‑250 (MQ=255) tcatttaacgccgcgcagttaagggaaataaactgcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACAGTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGct < 2:31713‑M2/204‑1 (MQ=255) tttaaccccgcgccgttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTAGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTCTACATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGt > 2:150954‑M2/44‑251 (MQ=255) tgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCg < 1:79155‑M2/242‑1 (MQ=255) gccaacACTTGTTAGTGTAATTCGCTAACTCATACTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCACCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCt < 1:93155‑M2/245‑1 (MQ=255) caacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtga < 1:225852‑M2/247‑1 (MQ=255) cACTTGTTAGTGTAATTCGCTAACTCATCCTGGCCTGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtgatg > 1:320768/1‑250 (MQ=255) aCTTGTTAGTTTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTTAACGCAGAAATCAAGAGGACAACATTATGGGTATTGTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGGTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTgatgat < 1:153372/251‑1 (MQ=255) | CAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGAT > NC_000913/1367678‑1368176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |