New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 275149	NA (NA)	28 (0.740)	23/488	0.5	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	577188 =	0 (0.000)					intergenic (‑363/‑210)	nmpC/essD	putative outer membrane porin NmpC/putative phage lysis protein

AGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGGCTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACG  >  NC_000913/576944‑577424                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                             gtttccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgataacttccaccatgttttgccatggcagaatatgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTgg                                                                                                                                                                                                                                        >  2:69964‑M2/245‑251 (MQ=255)    tccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGtt                                                                                                                                                                                                                                      <  1:146924‑M2/9‑1 (MQ=255)    tacagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGtt                                                                                                                                                                                                                                      <  2:17683‑M2/9‑1 (MQ=255)          ggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTtacgtac                                                                                                                                                                                                                               <  1:41005‑M2/16‑1 (MQ=255)                      cggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTgg                                                                                                                                                                                                                   <  1:306526‑M2/28‑1 (MQ=255)                         ccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTa                                                                                                                                                                                                                <  1:132868‑M2/31‑1 (MQ=255)                                      ttgggtaaaactgctcgatgactgccaccatgttttgccatggcagaatcttctccatgcgggacaagaaaatctctttgctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgtctcatgatgaacccttttctatggctccagatgacaaacatgatctcatatcagggacttgttcgctccttccTTAGTGGTTTACTTACGTAAAAAATTGTTTATGCTGttaata                                                                                                                                                                                                     <  2:246506‑M2/42‑3 (MQ=255)                                            aaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTAc                                                                                                                                                                                             >  1:38381‑M2/202‑251 (MQ=255)                                               acggctcgatgccttccaccatgttttgccagggcagaatctgctcctggcgggacaagaaaatctcttttcttgtctgacggctcttactgctgaattcactgtcggcgaaggtaagtggatttctcatgaggaaccctgttctatggctccagatgacagacatgagctcatatcagggacttgttcgcaccttccTTAGTGGTTTCCGTACGTAAAAAATTTGTTATGCTTTTCAGAGTGCTTACTTc                                                                                                                                                                                          <  2:259014‑M2/53‑1 (MQ=255)                                               acggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTc                                                                                                                                                                                          <  2:149680‑M2/53‑1 (MQ=255)                                                                           ccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGc                                                                                                                                                              <  2:91457‑M2/81‑1 (MQ=255)                                                                           ccatggcagaatctgctccatgcgggacaagaaaatcgcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgacgcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggtcttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGGTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGc                                                                                                                                                              <  2:332526‑M2/81‑1 (MQ=255)                                                                            catggcagaagctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCg                                                                                                                                                             <  1:94236‑M2/82‑1 (MQ=255)                                                                                         gctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTGCGTAAAAAATTGGTTATGCTGTTAAGAGTGGGTACTTCGTCACACAGCTTAAACCCGCCGGCGAGCGGGTTTTTCCAtt                                                                                                                                                 <  1:349854‑M2/94‑1 (MQ=255)                                                                                           tccatgcgggaccagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCAttttt                                                                                                                                              >  2:181153‑M2/155‑251 (MQ=255)                                                                                                        agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGatat                                                                                                                                 >  1:332467‑M2/142‑251 (MQ=255)                                                                                                                    ttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAAcc                                                                                                                     >  1:85173‑M2/130‑251 (MQ=255)                                                                                                                       tggtctgacggcgcttggtgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacacacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTATTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGTCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCa                                                                                                                   >  2:288209‑M2/127‑250 (MQ=255)                                                                                                                                ggcgcttactgatgaattcactgtcggcgaaggtaagttgatgactcctgttgaaccctgttctatcgctccagctgacaaacatgatctcatataagggacttgttagcaccttccTTAGTGGTTTACGTTCGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTCCTTCGTCACAAAGCTTAATCCAGCCGTCGAGCGGGTTTTTCCATTTTTTGCGTCTCGATATTAACTGATAACCCAATACCTGAGt                                                                                                         >  2:343178‑M2/118‑251 (MQ=255)                                                                                                                                      tactgctgaattcactgtcggcgaaggtaagttgatgacgcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTc                                                                                                    <  1:45937‑M2/139‑1 (MQ=255)                                                                                                                                         tgctgaattcactgtcggtgaaggcaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggccttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACTTGAGTTATTCACTg                                                                                                >  2:249641‑M2/109‑251 (MQ=255)                                                                                                                                          gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgaaaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTg                                                                                                >  1:34323‑M2/108‑250 (MQ=255)                                                                                                                                                        cggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGTGTCTGtt                                                                                  <  2:250728‑M2/157‑1 (MQ=255)                                                                                                                                                                                  atgaaccctgttctatggctccagatgacaaacatgctctaatatcagggacttgttcgcaccttccTAAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGTGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTac                                                       >  2:195187‑M2/68‑251 (MQ=255)                                                                                                                                                                                           gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCttt                                              <  2:4174‑M2/193‑1 (MQ=255)                                                                                                                                                                                                                         tcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATCGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAACTCCATgg                >  2:334292‑M2/29‑251 (MQ=255)                                                                                                                                                                                                                             tgcagagccatgttctcaccttccTGAGTGGTTTACGTACGTAAAAAGTTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAAACCGCCGTCGTGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCACTACCTGAGTTATTCACTGACTCCGAGTCTGTTAAGTTTCGTAGTATTCCCTCAATTTACACACGCTTTGTCTGCGTGGTAGGGTTATGAACACcatggtta             >  2:242217‑M2/25‑247 (MQ=255)                                                                                                                                                                                                                                         ttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTAGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTACATTTTTTGAGTCTCGATATTAGCTGATAACCAAATACCAGAGTTATTCATAGACTCCGAGTCTGTTACGTATCGTAGTATTCCCTCACTTTACAACCGCTTAGTCTGCGAGGTGGGGTAATGAACTCAATGGATAAgctaacaccg  >  2:117935‑M2/13‑246 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                             AGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGGCTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACG  >  NC_000913/576944‑577424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.