| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 98.0% | 158.9 / ‑3.2 | 51 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (8/42); total (8/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
TTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑C‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTC > NC_000913/3560211‑3560698 | ttttACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcgcagg > 1:201786/1‑245 (MQ=255)ttttACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGG‑CGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcgcaggc > 2:402091/1‑245 (MQ=255) cAACGAGTTAGCAACGATGAGATTGTTGGTGACAATGAGCAAATTGCTGTGAATGAGCAGGGCGTGCGCTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGAGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAAATGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGCTCAGGgttt > 2:372809/1‑251 (MQ=255) tgtaaccAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATGGAGCAGTGCGTCCGCTACCTCTCCCGGCGGGG‑TGCCAATATCGATAAACAGCGCCGGGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGTTGGCCGTGCGATCGTGCCACGGCGTTTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTc < 1:40773/244‑1 (MQ=255) tGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATGGAGCAGGGCGTGCGCTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTGGCGATCGTGCCACGGCGTGTG‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCAtt < 1:364176/250‑1 (MQ=255) gaagatgtggggTGACAAGGCGCAATTTGGTGGGATGGAGCAGTGCGTGCGCTACCCCTTCCGGCGTGG‑GGTGGATAGCGAGAAACAGCGTCGAGCCATTGGGGTTTTG‑CTCCGCCACTTGGCGGGCGAGGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCAtt < 1:95359/240‑1 (MQ=255) gagaTTGTGGGTGACAATGCGCAAATGGCTGTTATTAGGAATTGCGTGCGCTACCGTTGCCGGCGTTT‑CGCCGATAGCGATAAATAGCGTCGTTCCGTTGGGGATTTG‑CTCCGCCATTTTGCGGGCGATGGGCTCTTTTTTTTCGGTCTGGGTGGCCTTGGGATCGTTCCACGGTGTGTT‑AACCGAACGGGAAGGCAGCGCCCCGCCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGa < 1:256588/251‑1 (MQ=255) gACAATGCGCAAATTGCGTTGATGGAGAGGTGCGTGCGCTCCCGCTTCCGGCGTGG‑GGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CCCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGa < 1:163213/250‑1 (MQ=255) ttcttgtattaggCAGTGCGGTCGCTCCCGCTTCCGGCGTTG‑TGCCGATATCTATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCTCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCt < 1:83035/238‑1 (MQ=255) tGCTGTGTTTGAGCTGTGCGTGCGCTCCCGCTTCCGGGGGGG‑TGCGGATATCTATAAACAGCTTCGAGCCATGGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCTCCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCt < 1:239233/250‑1 (MQ=255) gatggAGCAGTGCGGGCCCTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgag < 1:189892/247‑1 (MQ=255) ggCAGGGCGTGCGCTGCCGCTCCCGGGGTGG‑TTCCGATACCGTAAAACAGCGTCGAGCAATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATg < 1:193799/250‑1 (MQ=255) gtggcgggggtgtccGCTTCCGGCGGGG‑GGCGTATATCAATAAACGGCGCGGGGCCATGGGGGTTTTG‑CCCCGCCCCTTTGCGGAGGATGCGCTCTTTTTCGTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑ACCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGctc < 2:192314/238‑1 (MQ=255) gcgggcgcTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGGGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCTAATAGTCTGCGGGCTGACGGAGAAATGCTCTa < 1:300570/246‑1 (MQ=255) gtgcgCTACCGTTTCCGG‑GTGGGTGCCGATAGCGATAAACGGGGTCGAGCTTGTGGGGATTTC‑CTCCGCCATTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGTTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCa < 1:348400/251‑1 (MQ=255) cTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGctct > 1:332753/1‑251 (MQ=255) ggtgcccgatgtctgaaaaCAGGGTCGAGCCATTGGGGGTTTG‑CTCCGCCCCTAGGCGGGGGATGCGCTTTTTTTCTGCGGCCGGGGTGGCCTTGCGTGCGTGCCACGTGGTGTG‑AACGGAAGTGTAATGCAGCCCCGCACCGCCATGATGGC‑GGAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATa < 1:399875/234‑1 (MQ=255) gaaagggATAGACAGGGTCGAGCC‑TTGGGGGTTTGGCTCCGCCACTTGGGGGGCGAGGCGCTCTTTTTCTTCGGTCGGGGTGGCTTGGCGATCGGGCCAGGGCGGTTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctgct < 2:105255/245‑1 (MQ=255) cgaaaaaCAGCGTCGAGCCTTTGGGGATGTG‑TGCCGCCATTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctgct < 1:18848/242‑1 (MQ=255) aaCAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAcc > 2:177933/1‑249 (MQ=255) cGTCGATCCATTGGTGTTTTG‑CTCGGCCACTTTTCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGGGGCCTCGCGATCGTGCCACGGTGTGTT‑ACCCGATCTGGAAGGCAGCGCCTCACCGCCATGATGGCGC‑AGGATCATGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa < 1:206547/251‑1 (MQ=255) tgAGCCATTTGGGATTTG‑CTCCGACACTTTGCGGACGGTGCGCCCTCTTTCTTCGGTTTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGTAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGAACAGGCTTTACTCCGCCAGCTCATTGAGGGCGAGGCGAATAGTCTGTGGTGTGACGGAGAAATGCTCTAACAGCTCTTCGGTATTGACGTAACCCTGCTTTTTTGCCAGTTCGaaa > 2:53257/2‑248 (MQ=255) cGAGCCATTGGGGATTTG‑CTAAGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGACGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCgcta > 1:322395/1‑247 (MQ=255) gAGCCATTGGGGATTTG‑GTCCGCCACTGTGCGGGCGAGGCTGTCTTTTTCTCGGGTCTGGGTGGCCTGGCGACCGGGCCGCGGCGTGTT‑AACCGAACTGGAAGGCGCCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCGCTTCGGTACTGACATAACCCTGCTGGTTAACCATTGCGataat < 2:202435/251‑1 (MQ=255) gggggATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGGGCCACGGCGTGTG‑AACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGtt < 1:177933/249‑1 (MQ=255) gaattgg‑CTCCTCCACTTTGCGGGCGATCCGCTCTTGTTCTTCGGTCTGTGTCGCTTTCCCATCTGGCCTCGGCTTGTT‑ATCAGATCTTGACGGCCGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGTTACTGACATATCCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGa < 1:5634/245‑1 (MQ=255) ttttcTCCGCCACTTGGCGGGCGATGCGCTCTTTTTCGTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACg < 1:116377/246‑1 (MQ=255) ccacACTTTGCGGGCTATGTGCGCTTTTTCTTCTGTTTGGGTGGCCTTGCGATCGTGCCACGG‑TTGTTTACCCGAACTGAAATGCAGCTCTGCACCGTCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACTGAGAAATGCTCTACCATCTCTTCTGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgttt < 1:52544/248‑1 (MQ=255) tggggggggtggcgcTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCGCGGCGGTTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCa < 2:334118/239‑1 (MQ=255) tggCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc < 1:294167/247‑1 (MQ=255) ggCGGGCGATGCGCTCTTTTTTGTCGGTCTGGGTGGCCTTGCGATCGGGCCCCGGCGTGTT‑AACCAAACTTGATGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGGGCGATAATACCGTTGTGACGTTGGTTTTGTTTCAtt < 2:332753/250‑1 (MQ=255) ggggtcgatggtctctTTTTCTTCGGTCGGGGTGGCCTTGCGTTCGTGCCTGGGGGTGTT‑AACGGAACGGGAGGGCGGCGCCGCTCCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACTCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAtt < 2:116211/238‑1 (MQ=255) cgttttttCTTCGGTCTGGTTGGCCTTGCGTTCGTGCCACGGCGTGTT‑AACCGACCTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTgg < 1:121328/248‑1 (MQ=255) ttttttCTGCGGTCTGGGTGGCCTTGCTATCGTGCCCCGGCTTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGa < 2:350036/249‑1 (MQ=255) ttttCTTCGTTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGa < 1:162575/248‑1 (MQ=255) ttctccggtcgcggTGCCCTTGCGCTCGTGCCACGGATTTTT‑AACCGATCTGGAAGGCATCGCCGCACCGCCATGATGGCGC‑AGGATCAGTTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCTGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAatta < 1:21556/238‑1 (MQ=255) tctgcGGTCTGGTTGGCTTTGCGTTCGGGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAattat < 2:403498/246‑1 (MQ=255) cgtcGGTCTGGGTGGCCTTGCGATCGTGCCACGTCGTGTT‑AACCGAACTGGAGGGCAGCGCCGCTCCGCCATGATGGCGC‑AGGAGCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAattatt < 1:72193/248‑1 (MQ=255) cTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAatt > 2:90606/1‑240 (MQ=255) cTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAatt < 1:90606/240‑1 (MQ=255) gaccgggCCACTGCGTGTT‑AACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATGGAGCGa < 2:339246/245‑1 (MQ=255) cGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATc > 1:300381/1‑251 (MQ=255) gTGCCACGGCTGGTT‑AACCGAACTGGAAGGCACCGCCCCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTTTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATca < 1:186386/251‑1 (MQ=255) ccGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaa < 2:201786/250‑1 (MQ=255) gtT‑AACCAAACGGGAGGGAAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGGTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGTCGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATGTTCGTTTTCGCGCATGGAGCTAATCAACAAAAGCCAt < 2:87556/250‑1 (MQ=255) t‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCg < 1:275740/250‑1 (MQ=255) aaCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt < 1:157246/251‑1 (MQ=255) ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaa < 1:402091/251‑1 (MQ=255) cgggAAGGCCGCGCCGCACCGTCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCa < 1:73889/249‑1 (MQ=255) cAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc > 2:173614/1‑251 (MQ=255) ccgcACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGc < 1:290621/251‑1 (MQ=255) ccGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGAtgt < 1:135223/251‑1 (MQ=255) gatgGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTc < 1:67096/250‑1 (MQ=255) | TTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGG‑TGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑C‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTC > NC_000913/3560211‑3560698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |