| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,955,010 | G→A | D666D (GAC→GAT) | torZ ← | trimethylamine N‑oxide reductase 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,955,010 | 0 | G | A | 96.8% | 106.7 / NA | 32 | D666D (GAC→GAT) | torZ | trimethylamine N‑oxide reductase 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (11/19); minor base C (1/0); total (12/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCGTCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCATTAA > NC_000913/1954779‑1955236 | cACGCCTTTTTCAATCCCGTCAGACACAACCACGCCAGTGCCAATCTGACCAAGTTTGTTCCAGAAACGCACCAGATCGCCATTCGCACAACCAAAGAGTGCAGCATCCTCGGCGAGAATGGTGCTTGGATCACGATCGGAGACCGCATCTTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGGCCGCAGCTGCAACTGCTTCTCCTCGGCGGCATCTTTCCAtt > 2:33935/1‑251 (MQ=255) gATCCCGTCAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCttt > 1:182580/1‑234 (MQ=255) gATCCCGTCAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGGGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCttt < 2:182580/234‑1 (MQ=255) aTCCCGTCAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAACATCTTCGGTGTGAATAGTGCTTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTCACTTTCCATTCATCCGGaacc > 1:199700/1‑246 (MQ=255) cccGTCAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGagccagcc > 1:81638/1‑251 (MQ=255) cccGTAAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACTATCTGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCGGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTGCCTTTCCATGCATCAGTagccagc < 2:54956/250‑1 (MQ=255) ccGTCAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGagccagccc > 1:365847/1‑250 (MQ=255) cagtcaCCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCCTTCCATTCATTAGGagccagcccaggg > 2:245281/1‑246 (MQ=255) gtcaCCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTgg < 1:308546/251‑1 (MQ=255) caccacCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTgggg > 2:162033/1‑250 (MQ=255) cgcCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCggg < 1:464077/251‑1 (MQ=255) ccTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGCGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTGTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCa < 2:50029/251‑1 (MQ=255) aaTCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTtat < 1:245281/251‑1 (MQ=255) cTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATACttct > 1:338656/1‑246 (MQ=255) ccACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCaaa < 2:129687/251‑1 (MQ=255) cACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAAt < 1:385965/251‑1 (MQ=255) tGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTTCATTCATCCGGAGCCAGCCAGGTTTGGTGTGCCGGGCAATCCTTATAg > 2:142684/1‑239 (MQ=255) tGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAg < 1:142684/239‑1 (MQ=255) cacGCACCAAATCGGCATTCACAATTTCGCAGCGTGCATGATCTGCGTTGTGAATAGTGACTGGTTCACAAGCGGCGGTTGCATATTTCTTACGCAGTTCCGCATAATTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTATCTGCTTATCTCCGGCGTTACCCTTCCATTCATCAGTCGCTAGCCAGGGTGGGTGTTCCGGTCAATCCTTATAGCCAGGGTTTTCCAACGtttgg < 2:73477/251‑3 (MQ=255) gCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGaa < 2:365847/251‑1 (MQ=255) aCCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATa < 1:86442/251‑1 (MQ=255) aaaGCGGGCAGCATCTTCGGTGTGAATAGTGAGTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCg < 1:107840/251‑1 (MQ=255) ggTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCa < 1:162033/251‑1 (MQ=255) aGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCg < 1:369258/250‑1 (MQ=255) ttCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGGATAGATTTCAATTTTTCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGaaa > 1:340948/1‑250 (MQ=255) aCGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGAt < 2:339245/192‑1 (MQ=255) aCGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGGGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGAt > 1:339245/1‑192 (MQ=255) atTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTgt < 1:13845/251‑1 (MQ=255) ccGCATAGTTAAGCTGACTGTGTAAACGGTGTTCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGATCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCTCCGGATCGGCGCGGAAATCTCCTTAACGAACGTACTGTTCGTTCTTCTCGCt < 2:29507/250‑1 (MQ=255) aaCGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTTCCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTAttt < 2:340948/251‑1 (MQ=255) gCGGTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGGTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCAt < 1:389650/250‑1 (MQ=255) gTCAGAAGCTGTAACTGCTTCTCATCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGGGTGCCGGGCAATCCTTTTAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTTACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTTCTGCCAGAAGGCATTaa > 1:97290/1‑250 (MQ=255) | CACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTCAAAATCTGACCACGTTTGTTCCAGACACGCACCAGATCGCCATTCGCAATACCAAAGCGTGCAGCATCTTCGGTGTGAATAGTGATTGGTTCACGATCGGCGATCGCATATTTTTTACGCAGTTCCGCATAGTTAAGCTGACTGTGTAAACGGTGTGCCGGATGTGCGGTCAGAAGCTGTAACTGCTTCTCGTCGGCGGTACCTTTCCATTCATCAGGAGCCAGCCAGGTTGGGTGTGCCGGGCAATCCTTATAGCCAAATTTTTCCAACGTTTTTGAATAGATTTCAATTTTGCCGCTTGGCGTACCCAGCGCATTTTTCACCGGATCGGCGCGGAAATCACCATAACGAACGTACTGTTCGTTCTTCTCGCTGTGGCGCATTTCGATCAGTTTATTTTGCTGCCAGAAGGCATTAA > NC_000913/1954779‑1955236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |