| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,367,750 | Δ176 bp | [pspF] | [pspF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1367750 | 1367925 | 176 | 27 [0] | [0] 28 | [pspF] | [pspF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1367749 | 0 (0.000) | 27 (0.610) | 25/482 | 0.6 | 100% | coding (164/978 nt) | pspF | DNA‑binding transcriptional dual regulator PspF |
| ? | NC_000913 | 1367926 = | 0 (0.000) | intergenic (‑14/‑153) | pspF/pspA | DNA‑binding transcriptional dual regulator PspF/phage shock protein A | |||||
TCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGAT > NC_000913/1367686‑1368176 | tgccgccaacgcgctacagttcaccgtactcaatcacgcgcaatcattcctcctgcaccatcttcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgctccgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttacgggaaataaacggcccttgccaacACTTGTTAgtg > 2:41920‑M2/241‑251 (MQ=255) ccgccaacgcgctccagttcaccgtactcaatcacgcgcaataatttctcctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTa < 1:12440‑M2/13‑1 (MQ=255) acgcgcgccagttcaccgtactcaatcacgcgcaataattgctccggcaccagcatcggtgccgtagcgaggtcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgcctacACTTGTTAGTGTAATTCGc < 1:381384‑M2/19‑1 (MQ=255) cgctccagttcaccgtactcaatcacgcgcaataatttctcctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggaacgttcaaatctccctggatgacggttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTAGCTa > 2:19578‑M2/230‑250 (MQ=255) gttcaccgtactcaatcacgcgcaataatttctcctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATcc < 2:463409‑M2/29‑1 (MQ=255) aataatgtctcctgcaccatcatcggggccgtagggagttcaacaagaaatagcgtaccgccgtcggcacgttcaaatctcccaggatgtcgtttttgcgcaccggtcaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttagcgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGAttcttc < 2:2665‑M2/52‑1 (MQ=255) taatttctcctgcaccatcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCa > 1:329628‑M2/198‑250 (MQ=255) atttctcctgcaccatcatcggggccgtagcgagttcatcaagaaatagcgtgccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacatttcggaatccagcagatttgcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATc < 1:218674‑M2/56‑1 (MQ=255) atcatcggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAAt < 1:443994‑M2/70‑1 (MQ=255) cggtgccgtagcgagttcatcaagaaatagctcacctccgtcggcacgttcaaatctccctggatgacggttttgcgcaccggtaaacgcccccgcctcgggaccaaacagttcggaatccatcatattttcagttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTGGCGGTTTATTCTTCAATCAGATCGTGATAAATCaaaa < 2:187022‑M2/75‑1 (MQ=255) ggtgccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCaaaaa < 1:198030‑M2/76‑1 (MQ=255) gccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCaaaa > 1:253950‑M2/173‑247 (MQ=255) gccgtagcgagttcatcaagaaatagcgtaccgccgtcggcacgttcaaatctccctggatgacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCaaaa > 1:11842‑M2/173‑247 (MQ=255) gttcaaatatcgctggatgacgtatttgaacacaggtaaaagcaaccgcttcctgaccaaagagttcggaatccagcagcttttaatttaacgccgcgcagttaagggaaataaacggcccttgccaccACTTGTTCGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGAATTAACAGTTCAGCCGGACa > 2:274154‑M2/130‑250 (MQ=255) ttcaaatctccctggatgacgttattgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaccACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCATTCAGATCTTTAAAAATCAACAAGATAAAAAATTGGCACGCAACTTGTATTAACAGTTCAACAGGTCaa > 2:336100‑M2/129‑250 (MQ=255) gacgtttttgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATc < 1:98177‑M2/139‑1 (MQ=255) tgcgcaccggtaaacgcccccgcttcgtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCATGACAATCCTGAACGCAGAAATCAAGAGGac < 1:379739‑M2/147‑1 (MQ=255) acgcccccgcttagtgaccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTAt < 1:5272‑M2/161‑1 (MQ=255) ccaaacagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCg < 2:233202‑M2/178‑1 (MQ=255) acagttcggaatccagcagattttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACAt < 1:19578‑M2/182‑1 (MQ=255) ttcatttaacgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGct > 1:333554‑M2/48‑251 (MQ=255) acgccgcgcagttaagggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAAGTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCGCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTaga < 1:448716‑M2/212‑1 (MQ=255) gttaagggaaataaacggcccttgccaacACCTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGaa < 2:109856‑M2/222‑1 (MQ=255) agggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATc < 2:11842‑M2/226‑1 (MQ=255) agggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATc < 2:253950‑M2/226‑1 (MQ=255) agggaaataaacggcccttgccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCAGTTGATTATTCAATCAGATCTTTATAAATCAACATGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGACCGCAGAAATCAGGAGGACAACATTATGGGTATTTTTTCTCGATTTGCCGACATCGTGAATGCCAACATCAACGCCTTGTTAGAGAACGCGGAAGAt > 1:434674‑M2/26‑250 (MQ=255) ccaacACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtg > 1:170440‑M2/6‑251 (MQ=255) aCTTGATAATGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATACATCAAAAAGATAACAAATTGTCTCGCAAATTGTATTAACAGTTCAGCAAGACAATCCTGAACGCAGATATAAAGAGTACAACATTATGTGCATTTTTTCTAGCTTTTACGACATCGTGAATGCCAACATCAAAGCTCTGTTAGAGAAAGCGGAAGATCCACAGACACTGTATCGTCTgttgat > 2:377394/1‑251 (MQ=255) | TCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATCTTTATAAATCAAAAAGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGAT > NC_000913/1367686‑1368176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |