New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542682 =	2 (0.050)	21 (0.490)	18/466	0.9	95.6%	intergenic (+49/‑433)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	4542996 =	0 (0.000)					intergenic (+363/‑119)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit

ATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTA  >  NC_000913/4542437‑4542930                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                         aTCCTCATATGTTAAGGCATGCTTGCGGTTATGCATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAACGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTgggg                                                                                                                                                                                                                                                     >  2:335966/1‑251 (MQ=255)   ccTCAAATGTTAAGGCATGTTTGGGGTTTTGAGTTGGCGGTACTTGTGGCAGATACTCTTTTAATTCAGGATTATCGCGGGCATGGAATTATTCCCCTTACTGTGCGTAATACCGCCAGTAAAGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGc                                                                                                                                                                                                                                                    <  2:316447/250‑1 (MQ=255)        acaacttcccctttaaagtgaacggtcccaccatgaaccgacgtggcagcggccagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACt                                                                                                                                                                                                                                              >  2:322447‑M1/239‑251 (MQ=255)            cttcccctttaaagtgaacggtcccaccattaaccgtcgtggcagcggccagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaacgatgaaacatTTGGGGCCAAACTGTcc                                                                                                                                                                                                                                          <  2:276688‑M1/17‑1 (MQ=255)             tAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAACGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactc                                                                                                                                                                                                                                         >  1:208359‑M1/1‑242 (MQ=255)                       aagtgaacggtcccaccattaaccgtcgtggcagcggccagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat                                                                                                                                                                                                                               >  2:29613‑M1/224‑251 (MQ=255)                       aagtgaacggtcccaccattaaccgtcgtggcagcggccagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat                                                                                                                                                                                                                               >  1:276688‑M1/224‑251 (MQ=255)                         gttaacggtcccaccattaaccgtcgtggcagcggccagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagtgttaattttcatgctgcttgcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacaggttgcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa                                                                                                                                                                                                                             >  1:437580‑M1/222‑251 (MQ=255)                            gTTATGAATTGGCGGAGAGTGGGGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGGGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgacgcatagaggaaagcatc                                                                                                                                                                                                                          <  1:332477‑M1/251‑25 (MQ=255)                                 gAATTGGCGGAGCGTGGTGCAGATACTCTTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATTCTTTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgg                                                                                                                                                                                                                      <  1:113858‑M1/250‑29 (MQ=255)                                                 cgtggcagcggccagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                                                                                                                      <  1:433926‑M1/53‑1 (MQ=255)                                                   gCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta                                                                                                                                                                                                    <  1:68591‑M1/250‑47 (MQ=255)                                                   gCAGATACGCGTTTAATTCAGGATTATCGCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAAGAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta                                                                                                                                                                                                    <  1:274958‑M1/250‑47 (MQ=255)                                                    ggcagcggccagagccgctgtagaactgagggacagagccgccagaacaacgattgccagagttttaattttcatgctgctttcctttcaaacaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa                                                                                                                                                                                                   <  2:347114‑M1/56‑1 (MQ=255)                                                             cagagccgctgtagaactgagggccagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                                                                                                                          <  1:98300‑M1/65‑1 (MQ=255)                                                             cagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                                                                                                                          <  2:208359‑M1/65‑1 (MQ=255)                                                                tAATTCCGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat                                                                                                                                                                                      >  1:347114‑M1/1‑191 (MQ=255)                                                                 gccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacaggtttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                                                                                                                                     >  1:27602‑M1/182‑251 (MQ=255)                                                                                 gggCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatcttt                                                                                                                                                                     >  1:74255‑M1/1‑174 (MQ=255)                                                                                   gCATCGAAATATTCGCCATTCTGGGCGTTAAACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatataggaaagcatcgctgacaatctttttcagtttatttgttggcttaatattctattgtgatcgttat                                                                                                                                                                   <  2:45667‑M1/251‑80 (MQ=255)                                                                                         gccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                                                                                                                             >  1:71622‑M1/158‑251 (MQ=255)                                                                                                         gtgCTTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatatatgtttatattgca                                                                                                                                               <  1:89497‑M1/249‑100 (MQ=255)                                                                                                                   tttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatt                                                                                                                                    >  1:135472‑M1/132‑250 (MQ=255)                                                                                                                        aGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttgg                                                                                                                                >  2:340354‑M1/1‑135 (MQ=255)                                                                                                                                  gctttcctttcaaaaaactatttctaaatcgacatgggcagtctttctgtacactttgttttgtaaacgagttttactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCAAAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAGTAAAAAACGACAAAAAGCATCTAACTGTTTGATAGGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc                                                                                                                    >  2:175411‑M1/117‑251 (MQ=255)                                                                                                                                                        aagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcagagatgaaagcatcgcggacaaactttttcagtttatttgttgtcttaatattcgattgtgatctttatttatagatgtttatattgcatgaggtggttgttggagagaagtatgaggaataacgggcgagtcacaga                                                                                              <  2:190201‑M1/251‑149 (MQ=255)                                                                                                                                                          taaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTc                                                                                            <  1:335966‑M1/159‑1 (MQ=255)                                                                                                                                                                    aatAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttag                                                                                      <  1:206131‑M1/246‑157 (MQ=255)                                                                                                                                                                         agtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCAt                                                                             <  2:294913‑M1/174‑1 (MQ=255)                                                                                                                                                                          cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgttgatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttacatat                                                                            >  1:331101‑M1/1‑85 (MQ=255)                                                                                                                                                                                    aaaaGAGAAGAGGATTGCTTTAGCTTATTGGTAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGAGGCCAttttgactaatagaagaaagcatcgcggaaaaaatttttcaggttatttgttggcttaatattctattgttatctttatttatagttgtttatattgcatgagatggtttttggagagaagaatgaggaagctgagtcgagccacagacacgttagctttacatatagcggaggtg                                                                  >  2:84163‑M1/1‑75 (MQ=255)                                                                                                                                                                                             tttgtaaacgagtttggctgccaacactgcacagttttccaccaagagaggaatcagTTGGGGCCAAACTGTCCATACCATAAATAAGTTGCGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAACAGCATCGAACTGTTTGATCTGTAAATTATTTCTATTGTAAATTAATTTAACATCACCTCCGCTATATGTAAAGCTCACGTTTCTGTGGCTCGACGCATCTTCCTCAATcttctcttc                                                          >  2:163122‑M1/58‑248 (MQ=255)                                                                                                                                                                                                        gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATTTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCCCCTc                                              >  2:433926‑M1/47‑251 (MQ=255)                                                                                                                                                                                                              ctgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCAGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCa                                         <  1:15784‑M1/210‑1 (MQ=255)                                                                                                                                                                                                               tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                                                                                                                                 <  1:384694‑M1/90‑1 (MQ=255)                                                                                                                                                                                                               tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                                                                                                                                 >  2:384694‑M1/40‑129 (MQ=255)                                                                                                                                                                                                                   aacactgcacagttttcccccaaaagatgaaacagTTTGGGCCAAACTGTCCATATCATAAATAAGTTACGTATATTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCTACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATaa                                   >  2:451877‑M1/36‑251 (MQ=255)                                                                                                                                                                                                                            tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatgtgaaattaatttacaatagaaataatttacatatca                           <  1:288723‑M1/250‑216 (MQ=255)                                                                                                                                                                                                                                         aaataCAAGACAATTGGGG‑CAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagcagaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatgtgaaattaatttacaatagaaataatttacagatcaaatagttatatgctt            <  1:350971‑M1/251‑231 (MQ=255)                                                                                                                                                                                                                                                    aaTTGGGGCCAttttgactcatagaggaaagcatcgcggccaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatgtgaaattaatttacaatagaaataatttacatatcaaacagttagatgctttttgtcgttt  >  2:98300‑M1/1‑11 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                         ATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTA  >  NC_000913/4542437‑4542930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.