Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	1,679,563	(TATCACGTTTTAATCACTGGATATCGATGGAAA)1→2	coding (7/1383 nt)	ydgI →	putative arginine:ornithine antiporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1679531 =	3 (0.070)	19 (0.430)	19/484	0.9	88.4%	intergenic (+160/‑26)	ydgH/ydgI	DUF1471 domain‑containing protein YdgH/putative arginine:ornithine antiporter
	?	NC_000913	= 1679563	2 (0.050)					coding (7/1383 nt)	ydgI	putative arginine:ornithine antiporter

AAGTTCGGGACGAATGCGCGTGAGGATCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATACCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1679757‑1679531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTG  <  NC_000913/1679563‑1679318                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGTTCGGGACGAATGCGCGTGAGGATCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATACCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTA                                                                                                                                                                                                                                 >  1:167116/1‑250      CGGGACGAATGCGCGTGAGGACCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATACCCCAGCCGAGGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACG                                                                                                                                                                                                                            <  1:317266/250‑1            GAATGCGCGTGAGGATCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATACCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGCGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCCGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATA                                                                                                                                                                                                                       >  1:226562/1‑249                GCGCGTGAGGATCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATACCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAG                                                                                                                                                                                                                  <  1:193034/250‑1                GCGCGTGAGGAGCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATCCCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCCACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCTCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTGCCATCGATATCCAGTGAGTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGA                                                                                                                                                                                                                 <  1:312159/251‑1                 CGCGTGGGGATCAGCAGGGCAAAGGCCAGCAAAAAAATGCCAGCGCCAGTAATCCCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAA                                                                                                                                                                                                                <  2:184432/251‑1                       AGGATCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATACCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAAT                                                                                                                                                                                                           >  1:404198/1‑250                                                                         CCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTT                                                                                                                                                        <  1:40592/251‑1                                                                                               GGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGC                                                                                                                                  >  1:183594/1‑251                                                                                                               CCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAA                                                                                                                   >  1:398984/1‑250                                                                                                                                  GAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAACCGTGATATTTCCATCGATATCCAGTGATTAAACCGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAATAATGCG                                                                                                >  1:416261/1‑250                                                                                                                                                     ATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCC                                                                            >  1:154034/1‑251                                                                                                                                                                                 CGCTCAGTCCCCGTTTCTTTTCCATCGATATCCAGTGATTAACACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCAATGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGCATAGTTATTTAT                                                >  2:403447/1‑251                                                                                                                                                                                         CCCAGTTTCTTTTCTATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGAATAAAAATGCGAAAGGCGGCATCATGCCGCCTTATAGGAGTAACGGAATAGTTATTTATGCAGATCT                                        <  1:405698/251‑1                                                                                                                                                                                               TTCTTTTCCATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGGTATTTATACAGATCTGCGCT                                   <  1:163569/250‑1                                                                                                                                                                                                       CATCGATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAG                          <  1:117574/251‑1                                                                                                                                                                                                           GATATCCAGTGATTAAAACGTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTT                       >  1:51950/1‑250                                                                                                                                                                                                                              GTGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACT   >  1:260441/1‑251                                                                                                                                                                                                                               TGATATTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTG  >  1:460824/1‑251                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGTTCGGGACGAATGCGCGTGAGGATCAGCATGGCAAAGGCCAGCAATAAAATGCCAGCGCCAGTAATACCCCAGCCGATGAGCAGTGCTGCCGGGCTGGCAACTGCCGCCATATTTTGCGGCAGACTGAAAACACCCGCGCCCAGCATTGAGCTTAATACCAGCGCGGTGAGTGCGCTCAGTCCCAGTTTCTTTTCCATCGATATCCAGTGATTAAAACGTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1679757‑1679531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCCATCGATATCCAGTGATTAAAACGTGATAAGAAGAATAAATATTAGGGCAAAACGCATAAAAATGGAGTTTGCCACTGAAGCGCGGGATTTTACGAAGAGATGTGTCTGCATGCAATGGTCGCGGGGAAATTTGTGACTAAAAATGCGAAAGGCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTG  <  NC_000913/1679563‑1679318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.