| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 98.6% | 245.8 / ‑4.6 | 70 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base G (31/37); minor base A (1/0); total (33/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
CCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCC > NC_000913/3560216‑3560699 | ccATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAgg > 2:316582/1‑251 (MQ=255) cAACGTGTTAGCAACGTGGAGATTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCATTGCGTGCGCTACCGCTTCCGGCG‑GGTGGCGTATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTGGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGtttt < 1:261991/251‑1 (MQ=255) cGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTAACGCTTCCGGCGTGGTGCCG‑ATATCGATAAACCGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCt > 1:453262/1‑251 (MQ=255) gtgtTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTc > 1:47933/1‑251 (MQ=255) ggtTAGCAACGTTGATATTGTTGGCGACAATGGGAATATTGCTGGTG‑TGGAGAGGTGCGTGCGAGACCGTGTCGGGCGGGGGGCCG‑ATATCGAGAAACAGCGCCGGGCTATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGTTGCTCTCTTTTTCTTCGGTCTGGGTGGCTTTGCGAGCGTGCCACGGCGTGTTAACCGAACTGGAAGGCGGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTcc < 2:369740/250‑1 (MQ=255) gCAACGTTGAGATTGTTGGAGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGcc > 1:115234/1‑249 (MQ=255) cAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGc > 1:173606/1‑251 (MQ=255) gagaTTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGACG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TACGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTg > 1:405891/1‑250 (MQ=255) gtggtggACAATGCGCAAATTGCTG‑TGATTGAGCATGGGGTGCGCTCCCCTTTCCGGCGTGGTGCCA‑TTATGAATAACCAGCGTCGGGCCTTTGGGG‑ATTTGT‑CCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTCCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTcgc < 1:147844/245‑1 (MQ=255) tgGTGACAAGGCGAAAATTGCTG‑GGATTGAGCAGGGCGTGCCCTCCCGCTTCCGGGGTGGTGCCG‑ATATCGATAACCAGCGTCGGGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTcgcg < 1:357472/250‑1 (MQ=255) gggTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGTGTGCCCTACCTCTTCCGGCGTGGTGCCG‑ATATGTAAAAACAGCGTCGCCCCAT‑GGGG‑GTTTGCCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTTGCCTTGCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCCCATTG‑AGGTcgcg < 1:168079/249‑1 (MQ=255) tGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTACGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCCTTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCAGGGCGTGTTAACCGAACTGGACGGAAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCGTTG‑GGGTCgcggcg > 1:450578/1‑250 (MQ=255) aaTGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAAt > 1:307860/1‑249 (MQ=255) tGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTGGGTCTGGTGGGCCTTGCGATCGTGCCACGACGTGTTAACCGAAATGGAAGGCAGCGCCGCACCGCCAGGATGG‑CGCAGGATCAGGTTTTGACCCGCCAGCCCATTGTAGG‑CGCGGAGAATAGTc > 2:179680/1‑251 (MQ=255) ggCTG‑TGATTGGGCAGGGGGTGCGCTCCCGCTCCCGGCGTGGTGCCA‑ATATCGTAAAACAGCGTCGAGCTTTTGGGG‑ATTTGC‑TCCGCCATTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCTTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCt < 1:340147/249‑1 (MQ=255) gttgggATTGAGCAGTGGGTGCGTTCCCGCTCCCGGCGTGTTGCCA‑ATATCGATAACCAGCGTCGACCCTTTGGGG‑TTTTGC‑CCCGCCCCTTTGCGGGCGAGGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTg < 1:351954/245‑1 (MQ=255) tg‑tgATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCACCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCCGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACg > 1:239715/1‑251 (MQ=255) aTTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACgg > 1:336319/1‑248 (MQ=255) gagcaaGTGCGTGCGTGCCCGCTTCCGGCGTGGGGCCG‑ATATCGATAACCAGCGCCGGGCTATTGGGA‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGACCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGaa < 1:243434/245‑1 (MQ=255) gAGCTGTGCGTGCGCTACCGTTTCCGGCGTGGTGCCG‑ATACCGATAAACAGCGTCGGGCCATTGGGG‑ATTTGC‑CCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAAt < 1:89730/251‑1 (MQ=255) gcgtggggttccgtttCCGGCGGGGTGCGG‑ATATCGAAAAACAGCTGCGATCCTTTGGGG‑TTGTGC‑TTCGCCTCTTTGGGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCATTGCGATCGTGCCACGGTGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAc < 1:62183/237‑1 (MQ=255) gtgcgCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCGGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAcc > 1:210956/1‑250 (MQ=255) gtgcgCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAATGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTAcc > 1:180250/1‑250 (MQ=255) gctacagattccgtcgcggagCCG‑ATATCGATAAACAGAGTCGAGCCATTGGGC‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTAGGTGGCATTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCCGGATACGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGACATGCGCTTCCAGctc > 2:262874/21‑251 (MQ=255) cccgtctcgggCGGGGTGCCG‑ATTTCGATAAACAGCTTCGAGCCGTTGGGT‑ATTGGC‑CCCGCCCCTTGGCGGGGGAGGCGCTCTTTTTCTGCGGTCTGGGTGGCCTTGCGAGCGTGCCACGGCGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCAAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 2:434311/241‑1 (MQ=255) aCCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGACTAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTc > 1:45116/1‑251 (MQ=255) cTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGt > 2:128364/1‑250 (MQ=255) cccGGCGGGGTGCCA‑AAAGCGTTAAACGGCGTCGAGCC‑TTGGGGTATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGGGGCCTTGCGACCGTGCCCCGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCGTCGGTAc < 2:237184/249‑1 (MQ=255) gggCGTGGTGCGT‑ATATGGATAAACAGCGTCGAGCCGTTGGGG‑TTTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCCCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGa < 1:364245/250‑1 (MQ=255) gggCGTGGTGCCG‑ATAGCAATAAACCTCTGCTAGCCATTGGGG‑TTTTGC‑TCCGCCACTTTGCGGGCGATGCTCTCTTGTTTTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGATAACCGAACTGGAAGGCACCGCCGTACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGa < 1:412231/250‑1 (MQ=255) ggtggtgCCG‑ATAGCGATAAACAGCGTCGAGCCATTGGGG‑TTTTGC‑TCCGCCACTTTGCGGGCTATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACAt < 1:37364/250‑1 (MQ=255) cggggtgCCG‑ATATCAATAAAGAGCGTCGAGCCATTGGGT‑AGTGGC‑GCCGCCACTGTGCGGGCGATGCGCTCTTTTTCTTCGTTCGGGGGGGCCTTGCGACCGGGCCACGGCGTGTTAACCGAACGGGAAGTCAGCGCCGCACCGCCATGATGG‑CGCAGGATTAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCgg < 1:45400/207‑1 (MQ=255) cGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCGATTGGGG‑ATTTGC‑TCCGCCCCTTTGAGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGCTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCCGCTCATTG‑AGGTCGCGGCGAATAGTCTGCgg > 2:45400/1‑210 (MQ=255) gtggtgCCT‑ATATCGATAACCAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATa < 1:280049/251‑1 (MQ=255) ccG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑CGGTCGCGGCGAATAGTCTGCGGGCTGACGAGGAAATTCTCTACCAGATCTTCGGTACTGACATAACActg > 2:175897/1‑251 (MQ=255) g‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctgct > 1:26406/1‑251 (MQ=255) cacgttCGAGCCAGTGGGG‑ATTCGG‑GCCGCCCCTTTGTGGGCGATGCGCGTTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTAAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCACCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:15830/246‑1 (MQ=255) cGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCgg > 2:172712/1‑250 (MQ=255) gttgagctgttGGGG‑GTTTGC‑TCCGCCACTTTGCGGGGGATGCGTTCTTTTTCTTCGGTCTGGGTGGCCTGGCGATCGTGCCACGGCGGGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGat < 2:175515/242‑1 (MQ=255) gTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGat > 1:262886/1‑251 (MQ=255) aTTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGt > 1:31643/1‑251 (MQ=255) ggggttttccgccGCCACTTTGGGGGGGATTCTCTCTTTTTCTCCGGTCTGGTGGGCCTTGCGATCGGGCCAGGGTGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCGTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgt < 2:440255/240‑1 (MQ=255) c‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑TGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTtgtg > 1:438235/1‑251 (MQ=255) c‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTtgtg > 1:333606/1‑251 (MQ=255) cccGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGACCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTgtgt < 1:102836/250‑1 (MQ=255) cGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGCCTGGGTGGCCTTGCGACCGTGCCACGGCGTGTTAACCGAGCTGGAAGGCAGCGCCTCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgttt < 1:122946/251‑1 (MQ=255) gCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtttg < 1:100647/251‑1 (MQ=255) cccACTTTGCGGGCGATGCTCTCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCGCGGCGTGTTAACCGAACTGGAAGGCGGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtttg < 2:210956/250‑1 (MQ=255) cACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAGCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCCGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGCTGtgtttgtt > 1:78644/1‑251 (MQ=255) ttGCGGGCGATGCGCTCTTTTTCGTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGGGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTgtttgttt < 1:417205/248‑1 (MQ=255) cGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAttt > 2:347986/1‑250 (MQ=255) cGGGCGATGCGCTCTTTTTCTTCCGTCCGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAAACGAACTGGACGGCAGCGCCGCACCGACCTCATGG‑CACAGGATCCGGTTTTGCTACGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGAAGGCGAAATGCTCTACCAGCTCTTCGGTTCTGACATAACCCTGCTGTTTAACCAGTTCGATAATACAGTTGTGACGTTGTGTTTGTTTCAttt > 2:266302/1‑250 (MQ=255) gctcttttttcCTTCGGTCTGGGGGGCCTTGCGAGCGTGCCACGGCGTGTTAACCGACCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTGTCATTTATAAATccc < 1:165671/245‑1 (MQ=255) tcttcGGTAGGGGGGGCCTGGCGCTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCCCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAattat < 2:115234/250‑1 (MQ=255) gttcGGTCTGGGTGGCGTGGCGATGGTGCCTCGGCGTGTTAACCGACCTGGAAGGCAGCGCCGCTCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTTTGTTTGTTTCAGTTATAAATCCCTGGAATTAttt < 1:120458/250‑1 (MQ=255) cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAc < 1:101241/201‑1 (MQ=255) cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAc > 2:101241/1‑201 (MQ=255) cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcg > 2:381806/1‑251 (MQ=255) ggTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgt < 1:29108/251‑1 (MQ=255) gggggTGTCCGTGCGCTCGTGCCCCGGGGTGTGAACCAAGCGGGTAGTCAGCTCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGGACTGACATAACCCTGCTGTTTAACCAGTTCGATAATGCCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgtttt < 2:262886/249‑1 (MQ=255) ggggTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttttc < 1:347968/250‑1 (MQ=255) gggTGGCCTTGCGCTCGTGCCAAGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAACAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGATCGATAATACCGTTGGGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttttcc > 2:402690/1‑250 (MQ=255) ggggccgtgggATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTTTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTcgcg < 2:362955/241‑1 (MQ=255) gCCTGGCGATCGTGCCACGGCGTGTAAACCGACCTGGAAGGCGGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCAt < 2:312103/251‑1 (MQ=255) gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATCATGGAG‑CAGGACCAGGTTTTGCTCCGCCAGCTCATTG‑AGGCCGCGGCGAATAGTCTGCGGGCTGACGGAGAACTGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATc > 1:41040/1‑250 (MQ=255) gCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCAGATCG‑CGAAGGATCAGGTTTTGCTCCGCCAGCTCACTG‑AGGTCGAGGCGAATAGTCTGAGGGATGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATACCCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCTTTGAGCGAATcaac > 1:276500/1‑251 (MQ=255) cGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaa > 1:36194/1‑250 (MQ=255) aCTGGAATGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAccc < 1:139390/251‑1 (MQ=255) cAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc < 1:122985/251‑1 (MQ=255) gatgG‑CGCAGTATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATCCCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTcc < 1:453189/251‑1 (MQ=255) | CCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTG‑TGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCG‑ATATCGATAAACAGCGTCGAGCCATTGGGG‑ATTTGC‑TCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTG‑AGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCC > NC_000913/3560216‑3560699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |