| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,423,891 | C→T | V207I (GTA→ATA) | hisP ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,423,891 | 0 | C | T | 96.4% | 80.2 / ‑4.0 | 28 | V207I (GTA→ATA) | hisP | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (18/9); total (19/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 | |||||||||||
TTAGCGGACTGTAACTTTTACATTTCAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTACCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGCCAGATACTTCACCGCCCGCTCGCGCGCTTCCTGCTT > NC_000913/2423645‑2424137 | ttAGCGGACTGTAACTTTTACATTTCAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTatcac‑c > 1:54032/1‑251 (MQ=255) cGGACTGTAACTTTTACATTTCAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATgg > 1:86441/1‑251 (MQ=255) gACTGTAACTTTTACATTTCAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGtt > 2:337525/1‑251 (MQ=255) ttcagcggaggccaccaagcacaTTCCCAACGAAAATACTCCGGCCGCGATAGCCACCGGAGAGGAAAATATTTCAGAGATCCCTTCAGGAACCGTTACAGACGCGGGCTTTGCGGGTTGCCAAACAACTGCTACGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGCGCCAAGCCCATTTCGTGAGTCACT‑CTACACATGGTTTTACCCTCTTCTGcc > 2:411703/23‑249 (MQ=255) ggAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTtgctg > 1:240785/1‑251 (MQ=255) gAAGCTGGATCGCAAATTCCCCATGAAAATACTCCTGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCCATGCATACGAGTTCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCGTCTTCTATTGTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCTATCAAAGTCCTTTTCGTGAGTCGCTATCGC‑CATGGCGTTCCTCTCTTCTTCCAGTtgctgc < 2:176847/251‑1 (MQ=255) cTGACTCGCAAATTCCCCATGAAAATACTCTGGCAGCGTTAGCCCCAGGTGAGGAAATTATTTCATAGCACCCTAACAAAACCGTTGCAGATGAGGCAATTGCGGGTTGCCAAATAACTGCTCCGGCGGGACATCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACAAGAGAAGAAACATGGCGAGCTAAGACCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTAGCTGCatc > 1:202668/1‑249 (MQ=255) gACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCGCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCataata < 2:45815/251‑1 (MQ=255) cTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGCGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACg > 1:196413/1‑251 (MQ=255) aTACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCACCTCTTCTGCCCGTTGCTGCATAATACGCAACACTTCGCCTACCattt > 2:204168/1‑248 (MQ=255) aGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCTCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATTCGCAACACTTCGCCTTCCAGTTCATGATCGAg < 1:321106/251‑1 (MQ=255) tAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCg > 2:9423/1‑251 (MQ=255) gagaGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGtt < 2:134417/251‑1 (MQ=255) attTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGt < 1:9423/251‑1 (MQ=255) agttCAGCGATCCCTGAAGGAACCGTTGCAGACGAGGGGTTTGCGGGTTTCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTGCCCCTGATGGAGGAAAATGACATGAGTAGAAACAGGGCGAGCAAAGCCCATTTCGTGAGGCACTATCAC‑CATGGTGTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAGCACGTCGCCTGCCAGTGCAGTATCGAGCGCCGAGGTAGGGTCATCATACAGt < 2:33231/249‑1 (MQ=255) gATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTc > 1:105489/1‑251 (MQ=255) gTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCACTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTAAGGATCGCGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAgc > 1:410148/1‑251 (MQ=255) aGACGAGGTCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGACTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCcg > 1:238914/1‑251 (MQ=255) ggCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGaa > 1:319848/1‑249 (MQ=255) aTTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATAttt < 2:105489/248‑1 (MQ=255) aTTTTCCCCTGATGGAGGAAAATGACAGGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTcc < 2:90057/250‑1 (MQ=255) aataaCATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGCCTATcc > 1:18870/5‑251 (MQ=255) aaTGACATGAGTAGAAACATGGCGCGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATcc > 2:355882/1‑251 (MQ=255) gTAGACACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGc > 2:253686/1‑251 (MQ=255) aaCATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGcc > 2:108794/1‑247 (MQ=255) cccATTTCGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGCCAGATACTTCACCGCCCGCTc > 1:228617/1‑251 (MQ=255) cGTGAGTCACTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGCCAGATACTTCACCGCCCGCTCGCGCGCt > 1:107031/1‑251 (MQ=255) aCTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGCCATATACTTCACCGCCCGCTCGCGCGCTTCCtgctt < 1:355882/251‑1 (MQ=255) aCTATCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGCCAGATACTTCACCGCCCGCTCGCGCGCTTCCtgctt > 1:243799/1‑251 (MQ=255) | TTAGCGGACTGTAACTTTTACATTTCAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTACCAC‑CATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACCGCCGGAAAGATGCACCGGATATTTCCCCTGCGCACGTTCGTCTATCCCGACTTTTGCCAGATACTTCACCGCCCGCTCGCGCGCTTCCTGCTT > NC_000913/2423645‑2424137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |