| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,688,938 | C→T | A121A (GCC→GCT) | manA → | mannose‑6‑phosphate isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,688,938 | 0 | C | T | 97.2% | 117.6 / NA | 36 | A121A (GCC→GCT) | manA | mannose‑6‑phosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (19/16); minor base G (0/1); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
CCGAAAAGCAGTTCACGAGTGCAGAATGCCGCCGGAGATATCGTTTCACTGCGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCCGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGAAAAATCCCGCGCGCTGGCGATTTTAAA > NC_000913/1688699‑1689183 | ccGAAAAGCAGTTCACGAGTGCAGAATGCCGCCGGAGATATCGTTTCACTGCGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTaa < 2:101450/251‑1 (MQ=255) cAGTTCACGAGTGCAGAATGCCGCCGGAGATATCGTTTCACTGCGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAATACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATaa > 1:380814/1‑249 (MQ=255) aGAATGCCGCCGGAGATATCGTTTCACTGCGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCCGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACcaca > 2:45264/1‑249 (MQ=255) aTGCCGCCGGAGATATCGTTGTACTGCGGGATGTGATTGAGAGGGATAAATCGACTCTGCGCTGAGAGGCCGTGGCCAAACGCTTCGGCGAACTGCCGGTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTGCAGCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCGGCAGGTATCCCGATGGATGCGGCGGAGCGTAACTATAAAGAGCCTAACCACAAGCCg < 2:80884/251‑1 (MQ=255) agaTATCGTTTCACTGCGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGGGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGttt > 2:363022/1‑251 (MQ=255) cGTTTCACTGCGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTgcg < 1:64149/250‑1 (MQ=255) cGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCAAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCttt > 1:403243/1‑251 (MQ=255) cTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGACACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCgg > 1:268516/1‑251 (MQ=255) gAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTACCTATAAAGATCCTAACCACAAGACGGAGCTGGTTTTTGCGCTGACGCCTTTACTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCAGGTCGCAgg > 1:37878/1‑251 (MQ=255) tGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGCTGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCg > 2:94524/1‑251 (MQ=255) gTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCg < 2:104503/250‑1 (MQ=255) cAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCTGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTg < 2:245831/251‑1 (MQ=255) cAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGAGGAACGCGTTTCGTTAATTGTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTg < 2:229341/251‑1 (MQ=255) aaaGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCAGGTCGCAGGTGCACATCCGGCGATTGc > 2:357322/1‑251 (MQ=255) aGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACg < 1:134593/163‑1 (MQ=255) aGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACg > 2:134593/1‑163 (MQ=255) tatGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACtt < 1:7910/250‑1 (MQ=255) gcagcaCAGCCACTCTCCATTCAGGTTCATCCAAACAAAGACAATTCTGAAAGCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGAGGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCGTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTaca < 2:380814/251‑1 (MQ=255) ctctCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAATAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAATCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCCCTTTTTacaac > 2:87499/1‑241 (MQ=255) ctctCCATTCAGGTTCATCAAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGAAGGTATCCCGATGGAGGCTGCCGAGCGTAACTATAAAGATCCGAACCACAAGCAGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTacaac < 1:87499/241‑1 (MQ=255) cATTCAGGTTCATCCAAACACACACAATTCTGAAATCGGTTTTCCCAAAGAAAATGCCGCAGGAATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACACCCGCCTGATGCCTAAc > 2:51772/1‑251 (MQ=255) gTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCAGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTa > 1:163714/1‑249 (MQ=255) aTCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGAt < 2:272793/233‑1 (MQ=255) aTCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGAt > 1:272793/1‑233 (MQ=255) ccAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACt > 1:11118/1‑251 (MQ=255) caaacaCAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGa < 2:147244/147‑1 (MQ=255) caaacaCAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGa > 1:147244/1‑147 (MQ=255) aaTCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGCTTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAat > 1:236229/1‑250 (MQ=255) ccAAAGAAAATGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTgaa < 1:338722/251‑1 (MQ=255) aaaGAAAATGCCGCAGTTATCCCGCTGGAGGCTGGCGAGCGTAACGATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCTCTGACGCCATTCCTTGCGATGAAATCGTTTCGTGAATTTTCCGAGATGGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGAGTGTGCACTTTTTACACCAGTCTGGTGCCGAGCGTTTAAGCGGACTGTTCGCTAGTCTGTTGATTATGCAGGGTgaaga < 2:44848/251‑1 (MQ=255) aaaaTGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGaaaa > 1:59254/1‑250 (MQ=255) aaaaTGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTGTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTGTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGaaaaa < 1:84025/251‑1 (MQ=255) tGCCGCAGGTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGAAAAATccc > 1:154934/1‑251 (MQ=255) ggTATCCCGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGAAAAATCCCGCGCGCt > 1:310450/1‑251 (MQ=255) cccGATGGATGCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGAAAAATCCCGCGCGCTGGCGa < 1:363022/251‑1 (MQ=255) gatgCTGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGAAAAATCCCGCGCGCTGGCGATTTTaaa < 2:11118/251‑1 (MQ=255) | CCGAAAAGCAGTTCACGAGTGCAGAATGCCGCCGGAGATATCGTTTCACTGCGTGATGTGATTGAGAGTGATAAATCGACTCTGCTCGGAGAGGCCGTTGCCAAACGCTTTGGCGAACTGCCTTTCCTGTTCAAAGTATTATGCGCAGCACAGCCACTCTCCATTCAGGTTCATCCAAACAAACACAATTCTGAAATCGGTTTTGCCAAAGAAAATGCCGCAGGTATCCCGATGGATGCCGCCGAGCGTAACTATAAAGATCCTAACCACAAGCCGGAGCTGGTTTTTGCGCTGACGCCTTTCCTTGCGATGAACGCGTTTCGTGAATTTTCCGAGATTGTCTCCCTACTCCAGCCGGTCGCAGGTGCACATCCGGCGATTGCTCACTTTTTACAACAGCCTGATGCCGAACGTTTAAGCGAACTGTTCGCCAGCCTGTTGAATATGCAGGGTGAAGAAAAATCCCGCGCGCTGGCGATTTTAAA > NC_000913/1688699‑1689183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |