| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,601,103 | C→T | V47M (GTG→ATG) | lsrR ← | DNA‑binding transcriptional repressor LsrR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,601,103 | 0 | C | T | 95.8% | 70.3 / NA | 24 | V47M (GTG→ATG) | lsrR | DNA‑binding transcriptional repressor LsrR |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (8/15); minor base G (0/1); total (8/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAAAACCAATCGCCAGCATCTGTTGTGGTTGAAGTAAACTCATCAACATATGCGCCGCGCCTATCCCCAGTCGCCCACCGACATCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAATTCATTCTTCACTTTGAACATATTTAAATCTTTAATGCAATTGTTCAGTTCTTGCTCATTTATATCTGTGATGGCAACCACAGTTTGACTCT > NC_000913/1600868‑1601335 | ccAAAACCAATCGCCAGCATCTGTTGTGGTTGAAGTAAACTCATCAACATATGCGCCGCGCCTATCCCCAGTCGCCCACCGACATCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAg < 1:366436/251‑1 (MQ=255) aCTCATCAACATATGCGCCGCGCCTATCCCCAGTCGCCCACCGACCTCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCcgt > 2:84228/1‑251 (MQ=255) ccTATCCCCAGTCGCCCACCGACATCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGAt < 1:72579/251‑1 (MQ=255) aTCCCCAGTCGCCCACCGACATCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATc < 2:379660/249‑1 (MQ=255) cccAGTCGCCCACCGACATCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCcgcgc > 1:188130/1‑251 (MQ=255) ccACCGACATCAGCCTCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGttc > 2:181420/1‑251 (MQ=255) ccACCGACATCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGttc < 2:437340/251‑1 (MQ=255) aTCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTc > 2:151460/1‑251 (MQ=255) cccAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAACCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGGTGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGCCGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTg > 1:158214/1‑251 (MQ=255) aGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGaaa < 1:151460/251‑1 (MQ=255) tGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTccc > 1:299669/1‑222 (MQ=255) tGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTccc < 2:299669/222‑1 (MQ=255) cAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCa < 2:188130/251‑1 (MQ=255) tacgacgTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCTACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAattcattc < 1:389763/249‑1 (MQ=255) gacgacGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTGCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAattcatt < 2:65916/249‑1 (MQ=255) acgTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATACTGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAATTCATTCTTCAc > 2:229398/1‑251 (MQ=255) gttCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTTTTAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAATTCACTCTTCACCTTGAACatat < 2:162997/250‑1 (MQ=255) tCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAatt > 2:20854/1‑222 (MQ=255) tCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAatt < 1:20854/222‑1 (MQ=255) ccAGACAGCCCTCAAAGCGAGAATTAATCTGGACGAGAATAAGGCCGGACTGATGCCCTTTCTCCAGCCAGCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTGCTGAAATTGCCGAATCGTTGATTGTCATAATTCATTCTTCACTTTGAACATATTTAAATCt < 2:421705/250‑1 (MQ=255) cAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGAGACATTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCGTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGAGTGTCATAATTCATGCTTCACTTTGAACATATTTAAATCTTTAATg < 1:181420/251‑1 (MQ=255) gCCTTCAAATCGAGAATTAATCTGGACGCGAATAATGCCTGACTGATGACCTTTCTCCAGCAATAGAGACAGTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCGCGTTCTGTGTCAGCCCGTCGTTATAGTAAAACCACTCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTTTGAAATTGCCGAATTTTTGATTGTCAGAATTCATTTTTCACTTTTAACATATTTAAATCCTTAATGCa < 2:248278/251‑1 (MQ=255) aTTAAACTGTAGGCAAATAATGCCTGACTGATGCCCTTTCCCCAGCAATCTAGCCATTTTCAACCGTTTCAGGCCAAGACGATCGCTGATCTCTCTCTGGGTTAGCCCGTCGTGATAGTAAAACCACGCGATCCACGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAAGCGTTGATTGTCATAATTCATTTTTCACTTGTATCATATTTAAATCTTTAATGCAATTTTTCATTTCTTg < 2:54134/251‑1 (MQ=255) ccAGCAATCGGGACATTTTCAAACGTGGCAGGCCGAGACGATCGCTGATCTCGCTCTGGGGCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAATTCATTCTTCACTTTGAACATAGTTAAATCTTTAATGCAATTGTTCAGTTTTTGCTCATTTATATCGGTTAGGGCAACCGCAGTGTGGctct < 2:137626/248‑1 (MQ=255) | CCAAAACCAATCGCCAGCATCTGTTGTGGTTGAAGTAAACTCATCAACATATGCGCCGCGCCTATCCCCAGTCGCCCACCGACATCAGCATCCGCAAGCCCAGGGATCACCCGGACATGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACCACGCGATCCGCGCGACCTGTTCTTCTTCACACATTCCCTGTTCTGAAATTGCCGAATCGTTGATTGTCATAATTCATTCTTCACTTTGAACATATTTAAATCTTTAATGCAATTGTTCAGTTCTTGCTCATTTATATCTGTGATGGCAACCACAGTTTGACTCT > NC_000913/1600868‑1601335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |