| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,811,231 | T→C | intergenic (‑79/+19) | mutM ← / ← rpmG | DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,811,231 | 0 | T | C | 96.8% | 104.2 / ‑6.3 | 31 | intergenic (‑79/+19) | mutM/rpmG | DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (14/16); minor base G (0/1); total (14/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGATTTATTTCCTCTAAGTACTTAGTACTTTTCGCCACGGGCACGCAGTTCAGCCA > NC_000913/3811003‑3811472 | aagctcttgtttgtctcTTAAACGGTAGTTCTCTGTTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCCCCTCCGAATGAAGAATGGTTGCACCACCGAGATGCGTCTCTATGCCGCGACGGATGTTGTCAACTTCTGGTAATCCAGGCATATCATCCCCAGGAATGAACAGATTCACTCAATATGGGTGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAattat < 2:421395/235‑1 (MQ=255) cACTGGTTGGTCGCTTAATAGGTAGCTCTCTTCTGATACCGGCCCGCGCAAGCCTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCCTAGAATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTg > 2:357638/1‑251 (MQ=255) gttggtCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGAtttt > 1:300324/1‑251 (MQ=255) tAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCtttt > 2:3013/1‑250 (MQ=255) gTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATGTTCGCTTCTTTGTAGATc < 1:112050/251‑1 (MQ=255) agatcgcgtctGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCTTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCAc < 1:422956/243‑1 (MQ=255) cGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACAAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCCACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACt > 1:187623/1‑251 (MQ=255) gTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtttttt > 1:38519/1‑251 (MQ=255) gTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCCGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGt > 2:142288/1‑251 (MQ=255) aCCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGttc < 1:184659/251‑1 (MQ=255) ggcTGGTTTCATCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTAcc < 2:140306/251‑1 (MQ=255) aCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAgaagaa > 2:111806/1‑250 (MQ=255) cAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGAtttt < 2:46892/251‑1 (MQ=255) cATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTTTAGATCACGTGCTGGCGAACAACTGGATc < 2:201566/151‑1 (MQ=255) cATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATc > 1:201566/1‑151 (MQ=255) aTAGCATCTCCAGGAATGAACAGATGCCATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACcag > 2:283496/1‑224 (MQ=255) aTAGCATCGCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTGCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACcag < 1:283496/224‑1 (MQ=255) cATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAAt < 1:350193/251‑1 (MQ=255) aTCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAAt > 1:326162/1‑250 (MQ=255) ctcCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATAcc > 1:177287/1‑251 (MQ=255) tcCAGGACTGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAAACCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTATCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCt > 1:88431/1‑251 (MQ=255) aagaaaagatgccatCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAACGCGAGAATTATTTGATTTTCGATTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGACGAAACCAGCTTGATTTTCTCACGAATACCTTTAGcc > 2:201838/15‑250 (MQ=255) aGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGattt < 1:181021/251‑1 (MQ=255) gcaatCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGATACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGatttattt < 1:205688/247‑1 (MQ=255) gcaatCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGatttatt < 2:384101/246‑1 (MQ=255) caatCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGATTTATTTc < 1:3013/248‑1 (MQ=255) gggCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGATTTATTTCCTCTAagtactt < 1:267725/251‑1 (MQ=255) gggCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGGTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCATCGTGATTTTCTCACGAATACCTTTAGCCATGATTTATTTCCTCTAagtactt < 1:410146/251‑1 (MQ=255) aaaaaaCCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGATTTATTTCCTCTAAGTACTTAGTACTTTTCGCCAc < 1:401279/251‑1 (MQ=255) ggAGGTTTTCGGTTACATCAAGGCTGGATTTATTGGATTTTCGCTTCTTTGTGAATCAGGTGCTGGCAAACAACTGGATCGATTTTTTTCAGTTCCGGTTTTTCCGGCTAATTACTTTTTTTCTTCGTAGTGGTAAAGAGTTGACCGGTCCCAGCGGAAGAAACCAGCTTGATTTTCTCACGAGTACCTT‑AGCCATGATTTATTTCCTCTAAGTACTTAGTACTTTTCGCCACGGGCACGCAGGTCAGCCa < 2:38519/250‑1 (MQ=255) ggTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGACTACCTTTAGCCATGATTTATTTCCTCTACGTACTTAGTACTTTTCGCCACGGGCACGCAGTTCAGcc > 2:350538/1‑248 (MQ=255) | AAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGATTTATTTCCTCTAAGTACTTAGTACTTTTCGCCACGGGCACGCAGTTCAGCCA > NC_000913/3811003‑3811472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |