| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,811,179 | G→A | intergenic (‑27/+71) | mutM ← / ← rpmG | DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,811,179 | 0 | G | A | 96.9% | 99.0 / ‑6.1 | 32 | intergenic (‑27/+71) | mutM/rpmG | DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (16/15); minor base C (0/1); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
AATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGATTT > NC_000913/3810939‑3811422 | aatgactgATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCCCTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCACCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATggg > 2:194036/1‑251 (MQ=255) aTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGACCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCACCGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGc > 1:82698/1‑250 (MQ=255) aGCCCTCAGGCAGCTCCAGCAGAAGATATTGAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACa < 2:274822/251‑1 (MQ=255) ccccTCAGGCATCCCCATCAGTATATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCGCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTTGTTTCATCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACaa < 1:179839/250‑1 (MQ=255) aGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCccgc < 1:166682/251‑1 (MQ=255) cagctatatAGCCCGCCGCTGCACGCTAAGCACTGGTTGCTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCCGCGCAAGCGTCCGTTGCGCCCCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCACCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGa > 2:181617/9‑224 (MQ=255) cagATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCGTCTGAAACCGGCCAGCGCAAGCGGCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAGCGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGa < 1:181617/224‑1 (MQ=255) cagATATTTAGCCCGCAGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGCGCGAGGt > 1:320817/1‑251 (MQ=255) agATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGtt < 1:257528/251‑1 (MQ=255) agATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGtt < 2:108340/251‑1 (MQ=255) aagctcttgtttgtctcTTAAACGGTAGTTCTCTGTTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCCCCTCCGAATGAAGAATGGTTGCACCACCGAGATGCGTCTCTATGCCGCGACGGATGTTGTCAACTTCTGGTAATCCAGGCATATCATCCCCAGGAATGAACAGATTCACTCAATATGGGTGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAattat < 2:421395/235‑1 (MQ=255) cACTGGTTGGTCGCTTAATAGGTAGCTCTCTTCTGATACCGGCCCGCGCAAGCCTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCCTAGAATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTg > 2:357638/1‑251 (MQ=255) gttggtCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGAtttt > 1:300324/1‑251 (MQ=255) tAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCtttt > 2:3013/1‑250 (MQ=255) gTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATGTTCGCTTCTTTGTAGATc < 1:112050/251‑1 (MQ=255) agatcgcgtctGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCTTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCAc < 1:422956/243‑1 (MQ=255) cGGCCAGCGCAAGCGTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACAAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCCACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACt > 1:187623/1‑251 (MQ=255) gTCCGTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtttttt > 1:38519/1‑251 (MQ=255) gTTGCGCACCACCGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCCGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGt > 2:142288/1‑251 (MQ=255) aCCAACGAGATGCGGTTCTATGCCGCGACGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGttc < 1:184659/251‑1 (MQ=255) ggcTGGTTTCATCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTAcc < 2:140306/251‑1 (MQ=255) aCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAgaagaa > 2:111806/1‑250 (MQ=255) cAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGAtttt < 2:46892/251‑1 (MQ=255) cATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTTTAGATCACGTGCTGGCGAACAACTGGATc < 2:201566/151‑1 (MQ=255) cATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATc > 1:201566/1‑151 (MQ=255) aTAGCATCTCCAGGAATGAACAGATGCCATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACcag > 2:283496/1‑224 (MQ=255) aTAGCATCGCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTGCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACcag < 1:283496/224‑1 (MQ=255) cATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAAt < 1:350193/251‑1 (MQ=255) aTCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAAt > 1:326162/1‑250 (MQ=255) ctcCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATAcc > 1:177287/1‑251 (MQ=255) tcCAGGACTGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAAACCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTATCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCt > 1:88431/1‑251 (MQ=255) aGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTCGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGattt < 1:181021/251‑1 (MQ=255) | AATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAACCAGCTTGATTTTCTCACGAATACCTTTAGCCATGATTT > NC_000913/3810939‑3811422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |