| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,796,782 | G→A | T268T (ACG→ACA) | waaC → | ADP‑heptose:LPS heptosyltransferase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,796,782 | 0 | G | A | 92.3% | 32.9 / ‑5.7 | 13 | T268T (ACG→ACA) | waaC | ADP‑heptose:LPS heptosyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (4/8); total (4/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCAACCGAT‑CCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGA > NC_000913/3796539‑3796881 | gacCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCAc < 1:388341/251‑1 (MQ=255) gatAAACACTGGTCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAAGACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTAGTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGCGGCTAAATTGGTAGTGTCAGTGGATACGGGGTTAAGCCATTGATCAGCGGCACGGTATAGAc < 2:51684/250‑1 (MQ=255) aaaCACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCa > 1:79314/1‑250 (MQ=255) cTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATc > 2:283719/1‑250 (MQ=255) ggCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACg < 1:283797/251‑1 (MQ=255) ggCTGAGTTAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGGCTGGCGGAAGGATTTGCTTATGTTGAAGTATGGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCTACCGAT‑CCGGGATTAATtggtgg < 1:288267/249‑1 (MQ=255) aTTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCTACCGAT‑CCGGGATTAATTGGTGGGTATggg > 1:109764/1‑251 (MQ=255) tCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCTACCGAT‑CCGGGATTAATTGGTGGGTATGGga < 2:109764/250‑1 (MQ=255) cGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCTACCGAT‑CCGGGATTAATTGGTGGGTATGGGAAGAATCAGAt < 1:283719/251‑1 (MQ=255) ggATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGAGTTGCTTATGTTGAAGTAGTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAAGTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACGGTGTATGGACCTACCGAT‑CCGGGATTAATTGGGGGTTATGGGAAGAATCAGATg < 2:174758/251‑1 (MQ=255) ttAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCTACCGAT‑CCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGtt > 1:280539/1‑250 (MQ=255) aaCTTCCGTGGGGCGCGCCGCATGAGGAAGAACTGGCGATACGACTGGCGGAAGGATTTGCGTATGTTGAAGTATTGGCTAAGATGAGTCTGGAAGTCGTTGCTCGCGTGCTGTCCGGGGCTAAATTTGGAGTTTCAGTGGATACGGGGTTAGGCCCTTTAACGGCGGCAATGGATGGTGTCAATATCTCGGTTTATTGTACTAG‑GATTCCGGGATTAATTGATGGGTATGGGAAGAATCAGATGGTTTGt < 1:175282/251‑1 (MQ=255) gcgcgaCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCAGTGGATACGGGGTTAAGCCATTTAACAGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCTACCGAT‑CCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTTTGTAGGGCTccgggg < 2:149413/251‑5 (MQ=255) | GACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTTATGTTGAAGTATTGCCGAAGATGAGTCTGGAAGGCGTTGCCCGCGTGCTGGCCGGGGCTAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCAACCGAT‑CCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGA > NC_000913/3796539‑3796881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |