| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,189,980 | 0 | A | G | 95.7% | 66.1 / ‑5.7 | 23 | T156T (ACT→ACC) | phoP | DNA‑binding transcriptional dual regulator PhoP |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (10/12); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
GGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACTTCGACTTTGTCCTGCCAGC > NC_000913/1189748‑1190200 | gggAAAAAAAGACTCAGTAATTTTGTCAGCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTAGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTc < 2:159244/251‑1 (MQ=255) ggAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCa < 2:5044/251‑1 (MQ=255) aaaaGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATGGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTg < 2:195969/251‑1 (MQ=255) aaTTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCa < 1:148933/251‑1 (MQ=255) aaTTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCAGTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGttt < 1:414156/238‑1 (MQ=255) aaTTTCTTCCTCAGCGCAATTCGAACAGATAGCCATGGCCGCGAACGGTGGTAATCCCTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCCGACGTCCCCTCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGCGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCACCGTTTCCATAATGGTGTATTCGCACGCGGTCAGttt > 2:414156/1‑238 (MQ=255) tttttCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTACCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCAtt > 2:24517/1‑250 (MQ=255) aCAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGATTCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCgag > 2:90375/1‑249 (MQ=255) cccTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCgag > 1:331504/1‑241 (MQ=255) cccTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCgag < 2:331504/241‑1 (MQ=255) cGGTGGTAATCACTTCTTGGGGCTATTGTGCCTGAATTTTTTTGCGCCGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGCAACCTGAAACgggggg > 2:290794/1‑251 (MQ=255) cACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTTCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGGGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATACTTCTCGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATg > 2:333473/1‑250 (MQ=255) atatTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGCATGGCTTTCCCGCAGCTCCGCCTCCGGATAGCGTTGGAGAATTAACGCATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCAATAATGGAGTATTCGAACGCGGTCAGTTTGCTCACTTCGt > 1:195737/1‑182 (MQ=255) gcAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAAt > 1:28407/1‑251 (MQ=255) gcAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAAt < 1:60181/251‑1 (MQ=255) aGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCAtt > 1:166381/1‑122 (MQ=255) aGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATGCGAACGCGGTCAGTTTGATCACTTCGTCAtt < 2:166381/122‑1 (MQ=255) ccGGATAGAGTTGGAGCATTTACGAATCTTTGCTGAACACTTTGCCATTAGTTCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACCTCGTCATTAATAGATAATTCTCGGCGAGAGAGAGCTACCTGAAACGGGGGGAGAGAAATGACCTGTGATGCCAGACCGCTATTACGGCGCATTAATGCCTGCAGTCGCTCCATCACCTCCTGAATATGAAACGGTTTAGGcacacaa < 2:137031/251‑4 (MQ=255) gagTTGGATCATTAACTAATCATTGCTGACCACTTAGCCATTATTGTGTATCAACGTTTCCATAATAGTGTATTCGAACGCAGTCAGTTTGATCTCTTCGTCATTAATAGATAATTCTCGGCGAGAGAGATCAACCTGAAACGGTGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGACGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAAAGGTTCAGTCTCATAttcatctg < 2:266267/251‑3 (MQ=255) tAACGAATCTTTGCGGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGGCAGTTTGATCACTTCGTCATTAATAGATAATGCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGTCCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCTTGCATTCGCGCCATCTCCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCTCCGGCCCtt < 1:295638/250‑1 (MQ=255) aaTCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACt > 2:48674/1‑251 (MQ=255) tGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGTCCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACTTCGAc < 1:290794/250‑1 (MQ=255) gCCATTATTGCGTATCAACGTTTCCATAAGGGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGTAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACTTCGACTTGGTCGTGcctgc < 2:293334/251‑4 (MQ=255) | GGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACTTCGACTTTGTCCTGCCAGC > NC_000913/1189748‑1190200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |