| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,497,385 | 0 | T | C | 100.0% | 49.8 / NA | 16 | F177S (TTT→TCT) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (11/5); total (11/5) | |||||||||||
| * | NC_000913 | 1,497,386 | 0 | T | . | 100.0% | 67.6 / NA | 16 | coding (531/1656 nt) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (11/5); total (11/5) | |||||||||||
| * | NC_000913 | 1,497,387 | 0 | C | A | 100.0% | 48.2 / NA | 16 | L178N (CTC→AAC) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (11/5); total (11/5) | |||||||||||
| * | NC_000913 | 1,497,388 | 0 | T | A | 100.0% | 47.9 / NA | 16 | L178N (CTC→AAC) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (11/5); total (11/5) | |||||||||||
CAACTGGACGCTCAGTTCTTCCATATGGGAATGGGATTCCGTCGCCGCGTTCGTATGTTTTCTGTAGATCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGTTCACTATCCATTGTG > NC_000913/1497153‑1497606 ||| cAACTGGACGCTCAGTTCTTCCATATGGGAATGGGATTCCGTCGCCGCGTTCGTATGTTTTCTGTAGATCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGGTCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCTAACTGGCGCGCGGTGATGTAGTATCATC‑AACGGCGCGAGTTAttt < 1:504840/250‑1 (MQ=255) aaCTGGACGCTCAGTTCTTCCATATGGGAATGGGATTCCGTCGCCGCGTTCGTATGTTTTCTGTAGATCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTcc < 1:380327/251‑1 (MQ=255) gTTCGTATGTTTTCTGTAGATCCAGCAACCCATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTg > 2:362144/1‑251 (MQ=255) gTAGATCAATCAACACATCTGGCTCATGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCACCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGAGGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTa < 2:12077/250‑1 (MQ=255) aaaacaTCTGGCGCGTGAAATGGACTTTAGCACGTAGTTGCTCAAATACATCGTTGCCGGTGTTGATACAAAACAATTAGAAGGGAAAAGCGATATCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCAAACTGGCGCGCCGTGATGTAGACTCATC‑AACGGCGCGAGATATCTCCGCGCCGTTGATGATACATATCAATCTGGTTTTTCGGCCCGTCACATGGCGTTCGACACTTaaaacgactgta > 2:92822/4‑239 (MQ=255) ccGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAATTCCCCGACTTTACCGCCTTCTgg > 2:368559/1‑251 (MQ=255) aaCAATTAGCAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGttt > 2:254612/1‑251 (MQ=255) aaCAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGttt < 1:111447/251‑1 (MQ=255) aaCAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGttt > 2:165493/1‑251 (MQ=255) aaGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGCATCATC‑AACGGCGCGAGTTCTTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGAGATCGACCCTTACACCGACAGTAAAGAAGTGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGCGCAACTACCTTTACCGTTTATCCGTTGc > 1:244817/1‑251 (MQ=255) aaagcgccccgagCTTTGCAGCTTTTGGCGTGTTTAACGACCCCGAACTGGAGCGCCGCGATGTAATATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGGTCGACACTTACCCCGACAGTCAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATAAGGTAAACCCGTGGGCAACTACATTTACCGTTTATGCGTTGCTCGAt > 2:369133/13‑250 (MQ=255) ctcGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGc > 2:183428/1‑251 (MQ=255) gtgttGCCGGTTTTCGCTTGTTTAAACCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGTCGCGATTTATTTCCGCGCGGTTGATGATACTTATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTGACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCTGGGGCAACTCCCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTa < 1:241223/248‑1 (MQ=255) ccGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTg > 2:129407/1‑251 (MQ=255) ttCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGACGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCtat > 1:341989/1‑250 (MQ=255) gAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGTTCACTATCCATtgtg > 1:166551/1‑249 (MQ=255) ||| CAACTGGACGCTCAGTTCTTCCATATGGGAATGGGATTCCGTCGCCGCGTTCGTATGTTTTCTGTAGATCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGTTCACTATCCATTGTG > NC_000913/1497153‑1497606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |