Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,792,541 C→T G64E (GGA→GAA)  nlpC ← NlpC/P60 family lipoprotein NlpC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,792,5410CT100.0% 122.8 / NA 36G64E (GGA→GAA) nlpCNlpC/P60 family lipoprotein NlpC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (24/12);  total (24/12)

TTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATCCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATT  >  NC_000913/1792294‑1792765
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                
tttCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAAACATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCg                                                                                                                                                                                                                               >  1:448778/1‑251 (MQ=255)
           aGACATTATCAAGTGCGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGAATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAATACCAGGTCACCTGGCAGCAACTCGTCTTTATCACTTTGCGTGCCAACAGAGGCTTGTTGTTTGGTTTCCCGGAGCACCTGCCAATCGGAACGATCGCGCATCGTCACAACCACACATTCCGAACactcacc                                                                                                                                                                                                                     >  1:449771/1‑244 (MQ=255)
                 tATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGTCCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGGCTTTATCAATGTGCGTGCCAATAGAGGCGTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCTTCGTCACAACCACAAATTCCGAACAGTCCTCAccgcg                                                                                                                                                                                                               <  2:550808/250‑1 (MQ=255)
                  aTCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTGCACTGGTCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACAccgcgcc                                                                                                                                                                                                             <  1:545028/251‑1 (MQ=255)
                     aaGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTCAATACCTACATGCAAACCATTTTGTACGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCGATTTGCGCGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCTGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACACATTCCGAACAGTCCACAccccgccgcg                                                                                                                                                                                                          >  2:532327/1‑251 (MQ=255)
                             aaCGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATCGAGGCTTGTTGTTTGGTTTTACGGGGCAGCTGCAAAACGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCCCGCCGCATCATGca                                                                                                                                                                                                   >  2:124360/1‑249 (MQ=255)
                               cGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTCAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGccacc                                                                                                                                                                                                >  2:200094/1‑251 (MQ=255)
                                      cTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACg                                                                                                                                                                                          >  1:101148/1‑250 (MQ=255)
                                                   agagGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTGTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGtgccat                                                                                                                                                                            <  2:462379/251‑1 (MQ=255)
                                                                  ttGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGAACCCCGTTTTGAAAAAGACCAGGTAACCTGGCAGCAACTCGTCTTTATCAATTTGAGTGCACATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCt                                                                                                                                                             >  1:346426/1‑251 (MQ=255)
                                                                           ggTATCGTAAATCCCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGACACGATCGCGCATCGTCACAACCACCAATTCCGAACAATCCAAACCGCGCCGCGTCATGCCACCCTAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTc                                                                                                                                                     >  1:550049/1‑250 (MQ=255)
                                                                                               gCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCCGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATc                                                                                                                                >  2:55341/1‑251 (MQ=255)
                                                                                                     cATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATc                                                                                                                           >  2:326393/1‑249 (MQ=255)
                                                                                                                     cGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTg                                                                                                          >  2:465466/1‑251 (MQ=255)
                                                                                                                         ttGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCCTGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTggcgg                                                                                                      >  2:165146/1‑251 (MQ=255)
                                                                                                                                          aCCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCCCGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGGACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGACAGGCTGGCATTTGGCGGCGGTGCTTTAttgtggg                                                                                     >  2:166655/1‑250 (MQ=255)
                                                                                                                                            cTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTAAAACCGGCAATAACGGGAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGGGGCt                                                                                    >  1:315398/1‑250 (MQ=255)
                                                                                                                                              ggCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTa                                                                                   <  2:20890/249‑1 (MQ=255)
                                                                                                                                               gcagcaACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAAAGGGAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTacac                                                                                >  1:256443/1‑251 (MQ=255)
                                                                                                                                                         gTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCATCTGCAAATCGAAACGCTAGAGCATCGTCACAACCACAAATTCCGGACAGTCCACACCGCGACGAGTCATGCCCCCATAACCATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCACTAACGGTCATCGACTAAGAAAGTCTTGCATTTGGCGGCGGTGCTTTATGGTCGCTACACCCggaccga                                                                       >  1:80578/1‑245 (MQ=255)
                                                                                                                                                             ttATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGc                                                                    <  2:448778/249‑1 (MQ=255)
                                                                                                                                                             ttATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTGCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACTCCCGGCCAGAAGCa                                                                   <  1:55341/250‑1 (MQ=255)
                                                                                                                                                              tATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAgg                                                                 >  1:467582/1‑250 (MQ=255)
                                                                                                                                                               aTCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGt                                                                 <  1:200094/250‑1 (MQ=255)
                                                                                                                                                                       gCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATc                                                        <  2:217037/251‑1 (MQ=255)
                                                                                                                                                                            ccAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTCGCTGGTCGTTCAAACCGGCAATAACGGGAATCGAATCAGAAAGGCTGGCATTTGGCGGCGGTGCTTTATGGTGGACACACCCGGCCAGAAGCAGTGCTGGGATCAAAAt                                                   >  2:523753/1‑251 (MQ=255)
                                                                                                                                                                             cAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGGGGTGGGATCAAAAt                                                   >  1:204366/1‑250 (MQ=255)
                                                                                                                                                                                   agGCTTGTTGTTTGGTTTCACGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGa                                           <  1:326393/251‑1 (MQ=255)
                                                                                                                                                                                       ttgttgTTTGGTTTCACGGGGCAGCTACAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGATCAAACCGGCAATAACGGGAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCGTTATGGTGGCTAACCCCGACCCGAAGCAGTGCTGTGGTCAAAATAAGGCAGAAAc                                        >  2:144445/1‑251 (MQ=255)
                                                                                                                                                                                          ttgttTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGGTCAAAATAAGGAAGAAACGc                                      >  2:103979/1‑250 (MQ=255)
                                                                                                                                                                                            ttttGGTTTCACGGTGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGGCGTGCAAACCGGCAATAACGGTAAGCGAATCAGAAAGTCTGGCATTGGGCGGCGGTGCTTGATGGTGGCTACGCTCGGCCAGAACCAGTTCTGTGATCATAATCAGGCAGGAACGCAt                                    <  2:77213/249‑1 (MQ=255)
                                                                                                                                                                                             tttGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAAtca                                                                                                                                        >  2:176815/1‑147 (MQ=255)
                                                                                                                                                                                             tttGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATaa                                                                                                                                        <  1:176815/149‑1 (MQ=255)
                                                                                                                                                                                                ggTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGAGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCg                                <  2:155193/250‑1 (MQ=255)
                                                                                                                                                                                                                          aaCGATCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGc     >  1:441559/1‑251 (MQ=255)
                                                                                                                                                                                                                              aTCGCGCATCGTCACAACCACAAATTCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGATACCCCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTCTTCTTGCAtt  >  1:394887/1‑250 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                
TTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTGAAAAAGACCAGGTCACCTGGCAGCAACTCGTCTTTATCAATTTGCGTGCCAATAGAGGCTTGTTGTTTGGTTTCACGGGGCAGCTGCAAATCGAAACGATCGCGCATCGTCACAACCACAAATCCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATT  >  NC_000913/1792294‑1792765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: