New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)42 (0.760) 40/488 0.4 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 362204 = 0 (0.000)coding (976/1254 nt) lacY lactose permease

GGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCCACCAGACCCAGCACCAGATAAGCGCCCTGGAAACCGATGCTTTCATACATATTGCCCGCCAGTACAGACATAAAAATCATCGCCAGTTGCTTAAAGAAGCAGAAACAGACCAGATAAATCGTCGCTGAAAAACGCACTTCAAACTGGCTGGTAATATATTTAAAGCAGCCCACCAGCAGGAACGGTACTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGAAATTAGC  >  NC_000913/361959‑362450
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                      
cgccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCaa                                                                                                                                                                                                                                                   <  2:453099‑M2/6‑1 (MQ=255)
 gccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagtgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCaaa                                                                                                                                                                                                                                                  <  2:458915‑M2/7‑1 (MQ=255)
        atggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaaacagtaagttggcagcctcaccCTTCAAACCTATGc                                                                                                                                                                                                                                           >  2:238953‑M2/238‑251 (MQ=255)
            ccatatcaatgattttctggtgcgtaccgggtttagaagcggtgtaagtgaactgcagttgccatgtttgacggcagtgagagcagagatagctctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgtcagcatcaccCGGCAAACAGATGCAGCg                                                                                                                                                                                                                                       <  2:317688‑M2/18‑1 (MQ=255)
                    atgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTCAAACATATGCAGCGTTTTCAGa                                                                                                                                                                                                                               <  2:346176‑M2/26‑1 (MQ=255)
                      gattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcattcactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTGTCAGaa                                                                                                                                                                                                                              <  2:264955‑M2/27‑1 (MQ=255)
                         tttctggtgcgtaccgggttgagaagcggtgtaagtgatctgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCAAACATATGCAGCGTTGTCAGAATaa                                                                                                                                                                                                                           <  2:458454‑M2/30‑1 (MQ=255)
                              ggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACtt                                                                                                                                                                                                                     <  2:191741‑M2/36‑1 (MQ=255)
                                    taccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAgcg                                                                                                                                                                                                               >  2:140357‑M2/210‑251 (MQ=255)
                                       cgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAAc                                                                                                                                                                                                                                                 >  2:522846‑M2/207‑214 (MQ=255)
                                       cgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAAc                                                                                                                                                                                                                                                 <  1:522846‑M2/8‑1 (MQ=255)
                                         ggttgagaagcggtgtaagtgaactgcagttgccatgttgtacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTGCAAACATATGCAGCGTTTTCAGAATAACCTCTTCCAGCGCTGAg                                                                                                                                                                                                          <  1:352576‑M2/47‑1 (MQ=255)
                                                aagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaacacaccatcatacactaaatcagtaagttggaagcatcaccCTTCACACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCg                                                                                                                                                                                                    >  1:227248‑M2/198‑250 (MQ=255)
                                                   cggtgtaagtgaactgcaggtgccatgttgtacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactagatcagtaagttggcagcatcgccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACg                                                                                                                                                                                                <  1:29628‑M2/57‑1 (MQ=255)
                                                             gtactgcagttgccatgttttacgacagtgggggcagagatagcgctgctgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgtaccggagggacagctgatacaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagcaagttggcagcatcgccCTTCCAACATATGCAACGTTTTCAGAATACCCACTTCCAGCGCCGAGGTGgccaacgatagaccaat                                                                                                                                                                                      >  2:344161‑M2/185‑243 (MQ=255)
                                                                          catgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGAc                                                                                                                                                                         >  1:402‑M2/172‑251 (MQ=255)
                                                                                               cagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccgtcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCcagcagc                                                                                                                                                    >  1:497856‑M2/151‑251 (MQ=255)
                                                                                                        cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGttt                                                                                                                                                                                                                                    >  1:508229‑M2/142‑162 (MQ=255)
                                                                                                        cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGttt                                                                                                                                                                                                                                    <  2:508229‑M2/21‑1 (MQ=255)
                                                                                                                           ttttgccgttacgccccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTccc                                                                                                                                      <  2:8313‑M2/115‑1 (MQ=255)
                                                                                                                           ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTccc                                                                                                                                      >  1:8313‑M2/123‑237 (MQ=255)
                                                                                                                                      cgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATTAGCGAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGgc                                                                                                             <  1:243433‑M2/140‑1 (MQ=255)
                                                                                                                                       gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGgcg                                                                                                            <  1:335952‑M2/141‑1 (MQ=255)
                                                                                                                                           caccccgtcagtagctgaacagtagggacagctgatagaaacagaagccactggagcacctcaaaatcaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCaaa                                                                                                        <  1:107732‑M2/145‑1 (MQ=255)
                                                                                                                                                       agctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCg                                                                                             <  2:309398‑M2/156‑1 (MQ=255)
                                                                                                                                                                ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCAc                                                                                                                                                                                                                       >  1:77591‑M2/86‑119 (MQ=255)
                                                                                                                                                                ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCAc                                                                                                                                                                                                                       <  2:77591‑M2/34‑1 (MQ=255)
                                                                                                                                                                  agggacagctgatcgaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGCGGCGCAAAGAACTTAATCGAGGCGTTAAGt                                                                                  >  2:376272‑M2/84‑250 (MQ=255)
                                                                                                                                                                      acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAACCATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGCGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTc                                                                             >  2:410151‑M2/80‑251 (MQ=255)
                                                                                                                                                                               agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCcagcagc                                                                                                                                                    <  1:319120‑M2/101‑1 (MQ=255)
                                                                                                                                                                               agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagctggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCcagcagc                                                                                                                                                    >  2:319120‑M2/71‑171 (MQ=255)
                                                                                                                                                                                   acagaagccactggagcacctcaaaaacaccagcaaacactaaatcagtaagttggcagcagcgccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGAGGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGtt                                                                <  1:344161‑M2/185‑1 (MQ=255)
                                                                                                                                                                                    cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAAGAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTa                                                               <  1:325517‑M2/186‑1 (MQ=255)
                                                                                                                                                                                                 agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATAc                                                  <  1:82354‑M2/199‑1 (MQ=255)
                                                                                                                                                                                                       tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGt                                            >  1:487733‑M2/47‑251 (MQ=255)
                                                                                                                                                                                                                           taaatcagtaagttggcagcatcaccCTTCAAACATATGCAACGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGGACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCACATACCCGCGTACCCTGTTCACCGGTAGCa                         >  1:188662‑M2/27‑250 (MQ=255)
                                                                                                                                                                                                                                      gttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTa             <  1:251791‑M2/236‑1 (MQ=255)
                                                                                                                                                                                                                                           cagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAAc                   <  2:237945‑M2/230‑1 (MQ=255)
                                                                                                                                                                                                                                           cagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAAc                   >  1:237945‑M2/11‑240 (MQ=255)
                                                                                                                                                                                                                                           cagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGAAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGa         >  2:224651‑M2/11‑250 (MQ=255)
                                                                                                                                                                                                                                                 caccCTTCAAACAGATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGAAATTAg   <  1:450927‑M2/246‑1 (MQ=255)
                                                                                                                                                                                                                                                  accCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGAAATTAGc  >  1:348757‑M2/4‑250 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                      
GGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCCACCAGACCCAGCACCAGATAAGCGCCCTGGAAACCGATGCTTTCATACATATTGCCCGCCAGTACAGACATAAAAATCATCGCCAGTTGCTTAAAGAAGCAGAAACAGACCAGATAAATCGTCGCTGAAAAACGCACTTCAAACTGGCTGGTAATATATTTAAAGCAGCCCACCAGCAGGAACGGTACTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGAAATTAGC  >  NC_000913/361959‑362450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.