New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	30 (0.580) +TTAAGTAATTGAGTG	29/458	0.6	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	2996360 =	NA (NA)					intergenic (+2504/+12)	ygeI/insD4	protein YgeI/IS2 insertion element protein InsB

AACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATC  >  NC_000913/1979024‑1979514                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                    taacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCAt                                                                                                                                                                                                                                                   <  1:11155‑M1/3‑1 (MQ=255)  aacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggtgcaaatccatcactcaattacttaaCATa                                                                                                                                                                                                                                                  >  1:111916‑M1/247‑250 (MQ=255)  aacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATaa                                                                                                                                                                                                                                                 >  1:463945‑M1/247‑251 (MQ=255)      gaatagcagagagcttcgtgtaaacgataaagcgtgactacttcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggactatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctgggaatataggggcaaatccaacactcaattacttaaCATAAATGt                                                                                                                                                                                                                                             <  1:378344‑M1/9‑1 (MQ=255)       aatagcagagagcatcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgatagcagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGta                                                                                                                                                                                                                                            >  2:416219‑M1/242‑251 (MQ=255)             agagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatttaggggcaaatccaacactcaattacttaaCATAAATGTATAAGTc                                                                                                                                                                                                                                      <  2:387291‑M1/16‑1 (MQ=255)                  gcgtcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACt                                                                                                                                                                                                                                 >  2:3806‑M1/231‑251 (MQ=255)                                  aaagcgtgactacatcaggatcatgcccaaaccagacgggtgaacggcagcaaagatccttgcagaggcgttcgatcattataacgaatggcatccgcatagtgcgctgggttatcgctcgcctcggtaagatctgcggcatctggcttgtaatgggttaagtgataacagttgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTa                                                                                                                                                                                                                  >  1:368808‑M1/215‑250 (MQ=255)                                   aagcgtgactacatcagtatcaagcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgggcgagcattataacgaatggaatccgcatagtgcgctgggttatcgctcgccgtgggaatatctgcggcagcgggcttgtaatgggttaagtgatggcagaggtctgtaaatatatgggcaaatccaacacccaagtacttaaCATAAATGTATAAGTCATGCTTTTGTTTTGGGTGTAtt                                                                                                                                                                                                                >  1:534040‑M1/214‑251 (MQ=255)                                    agcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                                                                                                               >  1:174243‑M1/213‑251 (MQ=255)                                             acatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTg                                                                                                                                                                                                        >  1:510218‑M1/204‑249 (MQ=255)                                                    tatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacggtaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaagtacgtaaCAt                                                                                                                                                                                                                                                   >  2:365889‑M1/197‑199 (MQ=255)                                                    tatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCAt                                                                                                                                                                                                                                                   <  1:365889‑M1/3‑1 (MQ=255)                                                                  cagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttgaCATAAATGTCTAAGTCATACtttt                                                                                                                                                                                                                              <  2:233989‑M1/24‑1 (MQ=255)                                                                  cagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttgaCATAAATGTATAAGTCATACtttt                                                                                                                                                                                                                              >  1:233989‑M1/183‑206 (MQ=255)                                                                               ggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttataatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                                                                                                                    >  2:436168‑M1/170‑251 (MQ=255)                                                                                       agaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                                                                                                                             <  1:552990‑M1/89‑1 (MQ=255)                                                                                                cagaggcgtgcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccactggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGTAAGCAAAAATGAAACAGTAATAATCGaa                                                                                                                                                   >  2:463563‑M1/153‑251 (MQ=255)                                                                                                      cgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaac                                                                                                                                                                                                                                                     >  1:391400‑M1/147‑147 (MQ=255)                                                                                                      cgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaac                                                                                                                                                                                                                                                     <  2:391400‑M1/1‑1 (MQ=255)                                                                                                            agcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggtaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAACCAGGAGTACTCGAAATGGGATGTTgc                                                                                                                                       <  1:51‑M1/111‑1 (MQ=255)                                                                                                                 tataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                                                                                                                   >  1:387291‑M1/136‑250 (MQ=255)                                                                                                                    aacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                                                                                                                               >  2:300424‑M1/133‑251 (MQ=255)                                                                                                                                       gtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat                                                                                                            >  1:251712‑M1/114‑251 (MQ=255)                                                                                                                                         gcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatggggtaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa                                                                                                          >  1:465539‑M1/112‑251 (MQ=255)                                                                                                                                                     cgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaacactcacttacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat                                                                                               <  1:385134‑M1/151‑1 (MQ=255)                                                                                                                                                                                             ggttaagtgataacagatgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTaa                                                      >  2:222023‑M1/60‑251 (MQ=255)                                                                                                                                                                                                             atgtctggaaatataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAGTACCAGATAAGCTATTTTTAAACAGACACTTACCGca                                      >  1:40370‑M1/44‑251 (MQ=255)                                                                                                                                                                                                                       atataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGATATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTCCCGCACAACAAACt                             <  2:71444‑M1/217‑1 (MQ=255)                                                                                                                                                                                                                       atataggggcaaatccaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACt                             <  2:408761‑M1/217‑1 (MQ=255)                                                                                                                                                                                                                                                  acttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATc  >  1:71444‑M1/7‑250 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                    AACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATC  >  NC_000913/1979024‑1979514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.